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The map label for this gene is yrfC [H]

Identifier: 218691670

GI number: 218691670

Start: 3953517

End: 3954056

Strand: Reverse

Name: yrfC [H]

Synonym: ECED1_4052

Alternate gene names: 218691670

Gene position: 3954056-3953517 (Counterclockwise)

Preceding gene: 218691671

Following gene: 218691669

Centisome position: 75.9

GC content: 53.7

Gene sequence:

>540_bases
ATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTTCGTTTCTGGTTGCTGATGTTCGT
TGCGCCTTTGCTGCTGGCCGTCGGGATAACGCTAATACTGCGTCTGACAAGCAATGCCGAAGCACGCGTAAACGCCGTTT
TGCTTCAGGCGGAACAACAACTCGCCCGCAGCTTACAGATAACGAAACCACGTTTGCTGGAACGCCAGCAGTTACGCGAA
CAGCGTTTGCAACGTCAGCGCCAGCGACAATTTACCCGCGACTGGCAATCTGCGCTGGAAGCACTGGCGGCGCTTTTACC
CGAACATGCCTGGCTGACAACGATAAGCTGGCAGCAGGGAACGCTGGAGATCAAGGGGCTGACAACAAGCATTACCGCGT
TAAACGCACTAGAAACGTCACTACGCCAGGATGCTTCTTTTCATCTCAATCAGCGGGGGGCCACGCAGCAGGATGCGCAG
GGACGCTGGCAATTTGAGTATCAGTTAACAAGGAAGGTTAGCGATGAACATGTTCTTTGA

Upstream 100 bases:

>100_bases
TTGACCCCTGGGAGGCGGTTTCTGTTCGTCAGCCGCCGCTACCGCCACCAGGTGGAGACTTTGCCATCGCGCTGGGGCTG
GCGCTTGGGAAGGTGTACTG

Downstream 100 bases:

>100_bases
CTGGTGGTTCGCCACATCACTCCGCCTCCGCCAGTTTTGCTGGGCAGTCTGGTTGCTGGTGTTAGTTACGCTCATTTTTC
TGTCATTGACACACCATGAA

Product: putative fimbrial assembly protein (pilN-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTSNAEARVNAVLLQAEQQLARSLQITKPRLLERQQLRE
QRLQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
GRWQFEYQLTRKVSDEHVL

Sequences:

>Translated_179_residues
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTSNAEARVNAVLLQAEQQLARSLQITKPRLLERQQLRE
QRLQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
GRWQFEYQLTRKVSDEHVL
>Mature_179_residues
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTSNAEARVNAVLLQAEQQLARSLQITKPRLLERQQLRE
QRLQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
GRWQFEYQLTRKVSDEHVL

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: COG3166

COG function: function code NU; Tfp pilus assembly protein PilN

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789796, Length=179, Percent_Identity=96.6480446927374, Blast_Score=294, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007813 [H]

Pfam domain/function: PF05137 PilN [H]

EC number: NA

Molecular weight: Translated: 20892; Mature: 20892

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTSNAEARVNAVLLQAEQQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LARSLQITKPRLLERQQLREQRLQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCC
TLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCC
>Mature Secondary Structure
MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTSNAEARVNAVLLQAEQQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LARSLQITKPRLLERQQLREQRLQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCC
TLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]