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The map label for this gene is oppF [H]

Identifier: 218549127

GI number: 218549127

Start: 1830477

End: 1831085

Strand: Reverse

Name: oppF [H]

Synonym: EFER_1779

Alternate gene names: 218549127

Gene position: 1831085-1830477 (Counterclockwise)

Preceding gene: 218549128

Following gene: 218549123

Centisome position: 39.9

GC content: 52.38

Gene sequence:

>609_bases
TTGTCTGAATGGGGAAGAAGAATGCTTAGCTGTCGTGATCTGCTCATTCGTCAGGGGGAGAAAGTCCTTTGGCAGAATCT
GTCATTTTCCTTAAGACCGGGCGAGCGGCTGGGGCTCAGTACTCCAAGCGGCAGCGGAAAAACCACACTCGGCAGAGTTC
TGGCTGGCTGGCAAAAACCGTTGTCAGGGGAGGTCCTGGTTGATGGTAAGCCGCTTGCGAACTGCGGTTATTGCCCGGTA
CAACTTGTACCACAACATCCGGAATTAACGTTTAATCCCTGGCGCAGCATTGCCGACTCTTTACAGGATTTCTGGTCACC
GGATGCTGAAATGATGGCGCGCTTACATATTGCACCTGAATGGCTAACGCGGCGTCCGGGTCAACTTTCTGGCGGTGAGC
TTGCCCGACTGGCGTTGTTACGAGCACTCGATCCACGTACGCGCTTTCTTATTGCTGATGAAATTACCGCACAACTAGAT
CCGGCAACTCAGCGTGATGTCTGGACGTTCTTGCTGGAATTGTGTCAGCGTCGTGCATTGGGCATGGTGGTAATAAGTCA
CCAGAAAGCGTTAGTGGCGCAAGTGTGCTCATCATTACTGGTTGAGTGA

Upstream 100 bases:

>100_bases
CGAGTCAGCGATAACCTTAGTCGGGAACAACTTCTGCAAGGCGAGATGAGCGAACAATTAAAGCGTCAGTGGCAGGCATT
GCCAGAAAAAAATCTACTTT

Downstream 100 bases:

>100_bases
ATTATGCGCGCTAAGTGCAAAAAACAGGCAATTATTCCTTCTGATGTATTTATGTAAACTATAGTTATTGCATGGACAAT
CTGTCTTGTGTATTATTCGC

Product: ATPase of ABC-type transport system

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSEWGRRMLSCRDLLIRQGEKVLWQNLSFSLRPGERLGLSTPSGSGKTTLGRVLAGWQKPLSGEVLVDGKPLANCGYCPV
QLVPQHPELTFNPWRSIADSLQDFWSPDAEMMARLHIAPEWLTRRPGQLSGGELARLALLRALDPRTRFLIADEITAQLD
PATQRDVWTFLLELCQRRALGMVVISHQKALVAQVCSSLLVE

Sequences:

>Translated_202_residues
MSEWGRRMLSCRDLLIRQGEKVLWQNLSFSLRPGERLGLSTPSGSGKTTLGRVLAGWQKPLSGEVLVDGKPLANCGYCPV
QLVPQHPELTFNPWRSIADSLQDFWSPDAEMMARLHIAPEWLTRRPGQLSGGELARLALLRALDPRTRFLIADEITAQLD
PATQRDVWTFLLELCQRRALGMVVISHQKALVAQVCSSLLVE
>Mature_201_residues
SEWGRRMLSCRDLLIRQGEKVLWQNLSFSLRPGERLGLSTPSGSGKTTLGRVLAGWQKPLSGEVLVDGKPLANCGYCPVQ
LVPQHPELTFNPWRSIADSLQDFWSPDAEMMARLHIAPEWLTRRPGQLSGGELARLALLRALDPRTRFLIADEITAQLDP
ATQRDVWTFLLELCQRRALGMVVISHQKALVAQVCSSLLVE

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=27.7486910994764, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI27262624, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI73747917, Length=173, Percent_Identity=32.3699421965318, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI73747915, Length=159, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI6005701, Length=193, Percent_Identity=27.4611398963731, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1788506, Length=202, Percent_Identity=31.6831683168317, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787547, Length=192, Percent_Identity=30.7291666666667, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787758, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI145693107, Length=196, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789890, Length=202, Percent_Identity=30.1980198019802, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789962, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787500, Length=217, Percent_Identity=27.6497695852535, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=29.2307692307692, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786698, Length=189, Percent_Identity=28.042328042328, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87081709, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI48994883, Length=223, Percent_Identity=26.0089686098655, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786253, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=214, Percent_Identity=30.3738317757009, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787370, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789963, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788540, Length=181, Percent_Identity=29.8342541436464, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787712, Length=174, Percent_Identity=28.1609195402299, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787759, Length=211, Percent_Identity=25.5924170616114, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=192, Percent_Identity=29.6875, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17511077, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641565, Length=191, Percent_Identity=28.7958115183246, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 22596; Mature: 22464

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEWGRRMLSCRDLLIRQGEKVLWQNLSFSLRPGERLGLSTPSGSGKTTLGRVLAGWQKP
CCHHHHHHHHHHHHHHHCCHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC
LSGEVLVDGKPLANCGYCPVQLVPQHPELTFNPWRSIADSLQDFWSPDAEMMARLHIAPE
CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHH
WLTRRPGQLSGGELARLALLRALDPRTRFLIADEITAQLDPATQRDVWTFLLELCQRRAL
HHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GMVVISHQKALVAQVCSSLLVE
CCEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEWGRRMLSCRDLLIRQGEKVLWQNLSFSLRPGERLGLSTPSGSGKTTLGRVLAGWQKP
CHHHHHHHHHHHHHHHCCHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC
LSGEVLVDGKPLANCGYCPVQLVPQHPELTFNPWRSIADSLQDFWSPDAEMMARLHIAPE
CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHH
WLTRRPGQLSGGELARLALLRALDPRTRFLIADEITAQLDPATQRDVWTFLLELCQRRAL
HHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GMVVISHQKALVAQVCSSLLVE
CCEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]