Click here to switch to the map view.

The map label for this gene is ycgB [H]

Identifier: 218549115

GI number: 218549115

Start: 1817770

End: 1819302

Strand: Direct

Name: ycgB [H]

Synonym: EFER_1767

Alternate gene names: 218549115

Gene position: 1817770-1819302 (Clockwise)

Preceding gene: 218549112

Following gene: 218549117

Centisome position: 39.61

GC content: 46.58

Gene sequence:

>1533_bases
ATGGCGACAATTGATTCAATGAACAAGGACACCACACGTTTAAGCGATGGACCCGACTGGACCTTTGACCTGCTGGATAT
TTACCTGGCAGAGATAGATCGTGTGGCGAAACTTTACCGACTGGACACTTACCCGCACCAAATAGAAGTCATCACGTCCG
AGCAGATGATGGATGCTTACTCCAGTGTAGGGATGCCCATTAACTATCCCCACTGGTCTTTCGGTAAAAAATTTATTGAA
ACCGAACGTCTGTATAAGCATGGTCAGCAAGGACTGGCCTATGAGATCGTCATTAACTCAAATCCGTGTATCGCGTATCT
GATGGAGGAGAACACCATTACAATGCAGGCGTTGGTAATGGCGCATGCCTGTTATGGTCACAACTCTTTCTTCAAAAACA
ATTACTTATTCCGTAGCTGGACCGATGCCAGTTCGATTGTTGATTACCTGATTTTTGCCCGTAAATATATTACTGAATGC
GAAGAGCGTTACGGCGTGGATGAAGTCGAGAAGTTGTTGGACTCCTGCCATGCGCTGATGAACTACGGTGTCGATCGCTA
CAAACGCCCACAAAAGATCTCGTTGCAAGAAGAAAAAGCACGGCAAAAGAGCCGGGAAGAGTACCTGCAAAGTCAGGTAA
ATATGCTTTGGCGAACATTGCCGAAACGCGAAGAAGAGAAAACCGTTGCCGAAGCACGCCGATATCCTTCCGAACCACAG
GAGAACTTGCTCTATTTTATGGAGAAAAACGCGCCATTACTGGAGTCATGGCAGCGTGAGATCCTGCGAATTGTCCGCAA
AGTCAGTCAGTACTTTTACCCTCAGAAACAGACTCAGGTGATGAATGAAGGTTGGGCAACGTTCTGGCACTACACCATTC
TTAATCATCTGTACGATGAAGGAAAAGTGACTGAGCGCTTTATGCTGGAATTCTTACATAGCCACACCAATGTCGTATTC
CAGCCCCCCTACAACAGTCCGTGGTACAGCGGTATCAACCCTTATGCTCTGGGATTTGCGATGTTCCAGGATATCAAACG
GATTTGTCAGTCTCCCACCGAGGAAGATAAATATTGGTTCCCGGACATCGCCGGTTCTGACTGGCTGGAAACACTGCATT
TTGCAATGCGCGATTTTAAAGACGAAAGTTTTATCAGTCAGTTCCTGTCACCGAAGGTAATGCGAGATTTTCGCTTTTTC
ACCGTCCTGGATGATGACCGGCATAATTATCTGGAAATATCCGCGATTCACAATGAAGAAGGTTACCGGGAAATTCGTAA
TCGCCTTTCTTCGCAATATAACCTGAGCAATCTGGAGCCCAATATTCAGATCTGGAATGTTGACTTACGTGGCGACCGTT
CACTGACTCTGCGTTATATTCCGCATAACCGTGCACCACTGGATAGAGGCCGCAAAGAAGTGCTGAAACATGTGCATCGC
TTGTGGGGATTTGATGTGATGCTCGAGCAACAAAATGAGGATGGCAGCGTTGAGTTACTTGAACGTTGCCCACCGAGAAT
GGGCAATCTTTAA

Upstream 100 bases:

>100_bases
AAAGAAAAAATTTCTCATCGTCACGGTTTTTAACAAGGTGTTCTATGCTTGAAATGAGGTGCTCCACACAGAGAGCGCCG
CCAACAATGAGGGTGCGCGT

Downstream 100 bases:

>100_bases
CAGATAATTGAATACCTTTCTCGTTGATCAAAAACCCCCTCAGCTGAGGGGGTCTCTTTATCACTGTTACTGCCCCTGGA
TGGACAAGTCACCAGGCAGA

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MATIDSMNKDTTRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIE
TERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ
ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVF
QPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFF
TVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR
LWGFDVMLEQQNEDGSVELLERCPPRMGNL

Sequences:

>Translated_510_residues
MATIDSMNKDTTRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIE
TERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ
ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVF
QPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFF
TVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR
LWGFDVMLEQQNEDGSVELLERCPPRMGNL
>Mature_509_residues
ATIDSMNKDTTRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIET
ERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECE
ERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQE
NLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQ
PPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFT
VLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRL
WGFDVMLEQQNEDGSVELLERCPPRMGNL

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=510, Percent_Identity=99.4117647058823, Blast_Score=1068, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 60787; Mature: 60655

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIDSMNKDTTRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAY
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
SSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHH
AHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVEKLLDSCHALM
HHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE
HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCC
GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEE
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCH
GYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR
HHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
LWGFDVMLEQQNEDGSVELLERCPPRMGNL
HHCCCEEEECCCCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
ATIDSMNKDTTRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
SSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHH
AHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVEKLLDSCHALM
HHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQ
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
ENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE
HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCC
GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEE
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCH
GYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHR
HHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
LWGFDVMLEQQNEDGSVELLERCPPRMGNL
HHCCCEEEECCCCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]