Click here to switch to the map view.

The map label for this gene is yciC

Identifier: 218549052

GI number: 218549052

Start: 1747618

End: 1748361

Strand: Direct

Name: yciC

Synonym: EFER_1699

Alternate gene names: 218549052

Gene position: 1747618-1748361 (Clockwise)

Preceding gene: 218549051

Following gene: 218549053

Centisome position: 38.09

GC content: 47.45

Gene sequence:

>744_bases
ATGTCTATCACGGCGCAGTCCGTATACCGTGACACCGGAAACTTTTTCCGCAATCAATTTATGACCATCTTGTTGGTATC
ATTGCTTTGTGCGTTTATCACCGTGGTAATTGGGCATGTATTCTCACCCAGTGAAGCGCAGCTCGCATCGTTAGATAAGG
TCGAGACATTGTCAGATAACGCCGGGCTGTTTGAGATTGTGCAAAATATGTCGCTGGAACAGAAGCAAGTCCTTGTTCAG
GCATCAGCAGCTTCTACTTTTTCAGGATTAATCGGTAACGCTATTCTGGCAGGCGGCATGTTACTGTTAATTCAGTTGGT
TTCTGCGGGACATCGCGTTAGCGCTTTACGTGCTATTGGTGCCAGTGCCCCGATCCTGCCTAAGTTGTTTATTCTGATCT
TCCTGACCACACTTATGGTACAAATTGGCATTATGTTTGTGGTTGTACCGGGTATTTTGATGGCCATTGTGCTGGCACTT
GCACCTGTCATGCTGGTGCAGGACAAAATGGGCGTTTTCGCCTCAATGCGCTCCAGTATTCGACTAACATGGGCAAATAT
GCGGCTTATCGCCCCGGCCGTTCTCAGTTGGTTGCTGGCAAAAACAGCATTGTTATTGCTCGCCTCCCGATTCGCTGCAT
TAACCCCGGAAGTTGGCGCCATACTGGCAAACACGTTGAGCAATCTTTTTTCTGCCGTTTTGCTCATTTATCTGTTCCGT
CTGTATATGTTGATCCGCCAATAA

Upstream 100 bases:

>100_bases
AAGATATGCCTTTCCATACAAGTGCAGATGCTGCCACTGAGGCATTAACCAGGGTACAATTGCCGGCTAATTAACACCTG
CAAAAACTCAAGGAGAGTGC

Downstream 100 bases:

>100_bases
TCCTGAAGTATTTGATTACGGAATCGTAAAATGAAGCAGTTTCTTGATTTTCTACCGCTGGTTGTTTTTTTCGCGTTTTA
TAAGATTTATGACATCTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVIGHVFSPSEAQLASLDKVETLSDNAGLFEIVQNMSLEQKQVLVQ
ASAASTFSGLIGNAILAGGMLLLIQLVSAGHRVSALRAIGASAPILPKLFILIFLTTLMVQIGIMFVVVPGILMAIVLAL
APVMLVQDKMGVFASMRSSIRLTWANMRLIAPAVLSWLLAKTALLLLASRFAALTPEVGAILANTLSNLFSAVLLIYLFR
LYMLIRQ

Sequences:

>Translated_247_residues
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVIGHVFSPSEAQLASLDKVETLSDNAGLFEIVQNMSLEQKQVLVQ
ASAASTFSGLIGNAILAGGMLLLIQLVSAGHRVSALRAIGASAPILPKLFILIFLTTLMVQIGIMFVVVPGILMAIVLAL
APVMLVQDKMGVFASMRSSIRLTWANMRLIAPAVLSWLLAKTALLLLASRFAALTPEVGAILANTLSNLFSAVLLIYLFR
LYMLIRQ
>Mature_246_residues
SITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVIGHVFSPSEAQLASLDKVETLSDNAGLFEIVQNMSLEQKQVLVQA
SAASTFSGLIGNAILAGGMLLLIQLVSAGHRVSALRAIGASAPILPKLFILIFLTTLMVQIGIMFVVVPGILMAIVLALA
PVMLVQDKMGVFASMRSSIRLTWANMRLIAPAVLSWLLAKTALLLLASRFAALTPEVGAILANTLSNLFSAVLLIYLFRL
YMLIRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0259 family

Homologues:

Organism=Escherichia coli, GI1787508, Length=247, Percent_Identity=85.82995951417, Blast_Score=406, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCIC_ESCF3 (B7LS23)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382843.1
- EnsemblBacteria:   EBESCT00000122923
- GeneID:   7123414
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1699
- GeneTree:   EBGT00050000011938
- HOGENOM:   HBG391222
- ProtClustDB:   PRK02868
- BioCyc:   EFER585054:EFER_1699-MONOMER
- HAMAP:   MF_01067
- InterPro:   IPR009627

Pfam domain/function: PF06790 UPF0259

EC number: NA

Molecular weight: Translated: 26656; Mature: 26524

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x29327940)-; HASH(0x2936fb00)-; HASH(0x2986ac78)-; HASH(0x2981737c)-; HASH(0x27f48e5c)-; HASH(0x27e44624)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVIGHVFSPSEAQLASLDKVETLSDN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
AGLFEIVQNMSLEQKQVLVQASAASTFSGLIGNAILAGGMLLLIQLVSAGHRVSALRAIG
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
ASAPILPKLFILIFLTTLMVQIGIMFVVVPGILMAIVLALAPVMLVQDKMGVFASMRSSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTWANMRLIAPAVLSWLLAKTALLLLASRFAALTPEVGAILANTLSNLFSAVLLIYLFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LYMLIRQ
HHHHHCH
>Mature Secondary Structure 
SITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVIGHVFSPSEAQLASLDKVETLSDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
AGLFEIVQNMSLEQKQVLVQASAASTFSGLIGNAILAGGMLLLIQLVSAGHRVSALRAIG
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
ASAPILPKLFILIFLTTLMVQIGIMFVVVPGILMAIVLALAPVMLVQDKMGVFASMRSSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTWANMRLIAPAVLSWLLAKTALLLLASRFAALTPEVGAILANTLSNLFSAVLLIYLFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LYMLIRQ
HHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA