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The map label for this gene is rluB

Identifier: 218549040

GI number: 218549040

Start: 1734889

End: 1735764

Strand: Reverse

Name: rluB

Synonym: EFER_1688

Alternate gene names: 218549040

Gene position: 1735764-1734889 (Counterclockwise)

Preceding gene: 218549041

Following gene: 218549037

Centisome position: 37.83

GC content: 53.08

Gene sequence:

>876_bases
ATGAGCGAAAAGCTACAGAAAGTGCTGGCGCGTGCCGGCCACGGTTCTCGCCGTGAAATCGAATCTATTATTGAAGCCGG
TCGTGTGAGTGTTGATGGCAAAATTGCTAAACTCGGCGATCGTGTTGAAATTACCCCTGGATTGAAAATCCGTATCGATG
GTCACCTGATTTCGGTACGTGAGTCCGCTGAACAAATTTGTCGCGTTCTGGCCTATTACAAACCGGAAGGTGAGTTGTGT
ACCCGTAACGATCCGGAAGGGCGTCCAACGGTATTTGACCGTCTGCCAAAGCTGCGTGGCGCACGCTGGATTGCCGTAGG
TCGTCTGGACGTTAACACCTGTGGTCTGCTGCTGTTCACCACCGACGGTGAGCTGGCAAACCGTTTAATGCATCCAAGCC
GTGAAGTTGAACGTGAATATGCCGTGCGTGTATTTGGTCAGGTTGACGACGCGAAACTGCGTGATTTGAGTCGTGGCGTG
CAGCTGGAAGATGGTCCGGCAGCCTTTAAAACCATTAAGTTCAGCGGCGGCGAAGGGATCAACCAGTGGTACAACGTTAC
TCTGACCGAAGGCCGTAACCGTGAAGTTCGTCGTCTTTGGGAAGCTGTTGGTGTGCAGGTGAGCCGTCTGATCCGCGTGC
GTTACGGTGATATCCCACTGCCGAAAGGTCTGCCACGCGGTGGCTGGACTGAGCTGGATCTTGCCCAGACTAACTATCTG
CGTGAGCTGGTGGAACTACCGCCAGAAACCAGCTCTAAAGTTGCTGTAGAAAAAGACCGTCGTCGTATGAAGGCGAATCA
AATTCGTCGTGCGGTGAAACGTCACAGCCAGGTCAGCGGCGGTCGTCGTTCTGGTGGACGTAATAATAACGGTTAA

Upstream 100 bases:

>100_bases
CAAACAGACTTTACTATCAGTGAGTCAGATGTAAGTTCTGACTCATTGTTGCACAAAAGCATATCAGACGCCTGGGAAGG
CGACACCAAAAGGAAGCTCT

Downstream 100 bases:

>100_bases
TTTAAGTTAAGTATTAAATAAAGGCCCTGCGGCGCCTTTTCTTCATTTGAAGCCATTCAGTATCTAAAATTAGCACCTCA
AGAGGCGAACTTTTGAGGTG

Product: 23S rRNA pseudouridylate synthase B

Products: NA

Alternate protein names: rRNA pseudouridylate synthase B; rRNA-uridine isomerase B

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEITPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELC
TRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL
RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG

Sequences:

>Translated_291_residues
MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEITPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELC
TRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL
RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG
>Mature_290_residues
SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEITPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCT
RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQ
LEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR
ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG

Specific function: Responsible for synthesis of pseudouridine from uracil- 2605 in 23S ribosomal RNA

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787524, Length=291, Percent_Identity=99.6563573883162, Blast_Score=585, Evalue=1e-169,
Organism=Escherichia coli, GI1790453, Length=293, Percent_Identity=29.6928327645051, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788510, Length=234, Percent_Identity=30.3418803418803, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87081838, Length=193, Percent_Identity=33.6787564766839, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLUB_ECOL6 (Q8FHV4)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753638.1
- ProteinModelPortal:   Q8FHV4
- SMR:   Q8FHV4
- EnsemblBacteria:   EBESCT00000040558
- GeneID:   1035518
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1734
- GeneTree:   EBGT00050000009689
- HOGENOM:   HBG754478
- OMA:   ELCTRSD
- ProtClustDB:   PRK10700
- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942
- SMART:   SM00363
- TIGRFAMs:   TIGR00093

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4; SSF55120 PsdUridine_synth_cat_dom

EC number: NA

Molecular weight: Translated: 32726; Mature: 32595

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS01149 PSI_RSU; PS50889 S4

Important sites: ACT_SITE 110-110

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEITPGLKIRIDGHLISVR
CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCEEEECCCCEEEECCEEEEHH
ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEEE
TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH
RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEITPGLKIRIDGHLISVR
CHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCEEEECCCCEEEECCEEEEHH
ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEEE
TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH
RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157