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The map label for this gene is ydgT [H]

Identifier: 218548779

GI number: 218548779

Start: 1456739

End: 1456954

Strand: Reverse

Name: ydgT [H]

Synonym: EFER_1418

Alternate gene names: 218548779

Gene position: 1456954-1456739 (Counterclockwise)

Preceding gene: 218548781

Following gene: 218548778

Centisome position: 31.75

GC content: 41.2

Gene sequence:

>216_bases
ATGACTGTACAGGACTATTTATTAAAATTTCGTAAAATCAGTTCGCTTGAAAGTCTTGAAAAACTGTTTGACCATCTTAA
TTATACCCTTACCGATGATCATGAAATAATCAATATGTACCGTGCTGCTGACCATCGTCGTGCAGAACTGGTCTCTGGTG
GTCGTCTGTACGATATCGGCAAAGTGCCGCAATCCGTCTGGCACTACGTGCAATAA

Upstream 100 bases:

>100_bases
ACCTATTTCATTGCTGGCTGTTGAATAATTTTTGTGGTTATTTTGCCGTTCCCGGAGTCAATCCTACCTCTTTAGTATTA
ATTTTAATATGGAACCTTCT

Downstream 100 bases:

>100_bases
TAAAGAAAGTAGCGATCATCATTGAAAGCGATATAATAATCGGCTCAAATGATTTGGTACGCCTGTTAGCTTTAGCACAT
CCGGAGAAATTATGACCTCA

Product: oriC-binding nucleoid-associated protein

Products: NA

Alternate protein names: H-NS/stpA-binding protein 2 [H]

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDHEIINMYRAADHRRAELVSGGRLYDIGKVPQSVWHYVQ

Sequences:

>Translated_71_residues
MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDHEIINMYRAADHRRAELVSGGRLYDIGKVPQSVWHYVQ
>Mature_70_residues
TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDHEIINMYRAADHRRAELVSGGRLYDIGKVPQSVWHYVQ

Specific function: The complex formed with H-NS binds to the specific 26-bp cnb site in the origin of replication oriC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hha/ymoA/cnu family [H]

Homologues:

Organism=Escherichia coli, GI1787912, Length=71, Percent_Identity=90.1408450704225, Blast_Score=139, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007985 [H]

Pfam domain/function: PF05321 HHA [H]

EC number: NA

Molecular weight: Translated: 8426; Mature: 8295

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDHEIINMYRAADHRRAELVSGGRLYDIG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECH
KVPQSVWHYVQ
HCHHHHHHHCC
>Mature Secondary Structure 
TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDHEIINMYRAADHRRAELVSGGRLYDIG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECH
KVPQSVWHYVQ
HCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]