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The map label for this gene is torD [H]

Identifier: 218548561

GI number: 218548561

Start: 1236220

End: 1236849

Strand: Direct

Name: torD [H]

Synonym: EFER_1193

Alternate gene names: 218548561

Gene position: 1236220-1236849 (Clockwise)

Preceding gene: 218548560

Following gene: 218548562

Centisome position: 26.94

GC content: 53.65

Gene sequence:

>630_bases
GTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGCACAACAGATTGCCTGTGTCTACGCCTGGCT
GGCGCAGTTGTTCTCCCGTGAGCTGGACGATGAACAACTGACGCAGATCGCCAGTGCGCAGATGGCTGAATGGTTTTCGT
TGCTAAAAAGCGAACCGCCGCTCACTGCGGCGGTGAACGAGCTGGAAACTAAAATTGCCGCTCTGACAGTGCGTGACGAC
GCTCGTCTGGAACTGGCCGCTGACTTTTGCGGCCTGTTTCTGATGACCGACAAACAAGCGGCGCTGCCGTATGCATCGGC
CTACAAACAGGACGAGCAAGAGATTAAACGCTTGTTAGTTGAGGCAGGGATGGAAACCAGCGGCAATTTCAACGAACCGG
CAGATCATCTGGCGATCTATCTCGAGTTGTTGAGTCATCTGCATTTTTCGCTGGGAGAGGGGACCGTTCCTGCGCGAAGA
ATCGACAGTTTGCGGCAAAAAGTACTGACGGCGCTGCAACAATGGTTACCAGAGTTTGCGGCGCGTTGCCATCAGTATGA
CAGCTTTGGTTTTTACGCTGCACTAAGCCAGTTATTGCTGGCGTTAGTGGAGTGCGATAAGCAGCACTGA

Upstream 100 bases:

>100_bases
AGGCGACCAGTGCGCATACCACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAATGGC
CCCGTTGAGATGGTGGCGCA

Downstream 100 bases:

>100_bases
TGGCATCCCGGCCGGAGAGATTTATACTCTCCGGCTATTTTTTAAGATGTAAAAGTCGATAAACCCACCTATTTCACCTC
TTACTCTTGCCATTGACTAC

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRICSRVAGEIMTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELETKIAALTVRDD
ARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARR
IDSLRQKVLTALQQWLPEFAARCHQYDSFGFYAALSQLLLALVECDKQH

Sequences:

>Translated_209_residues
MRICSRVAGEIMTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELETKIAALTVRDD
ARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARR
IDSLRQKVLTALQQWLPEFAARCHQYDSFGFYAALSQLLLALVECDKQH
>Mature_209_residues
MRICSRVAGEIMTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELETKIAALTVRDD
ARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARR
IDSLRQKVLTALQQWLPEFAARCHQYDSFGFYAALSQLLLALVECDKQH

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787232, Length=198, Percent_Identity=94.9494949494949, Blast_Score=383, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023069
- InterPro:   IPR020945
- InterPro:   IPR009073 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 23442; Mature: 23442

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRICSRVAGEIMTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
LTAAVNELETKIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLV
HHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
EAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKVLTALQQWLPEFA
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARCHQYDSFGFYAALSQLLLALVECDKQH
HHHHCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRICSRVAGEIMTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
LTAAVNELETKIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLV
HHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
EAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKVLTALQQWLPEFA
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARCHQYDSFGFYAALSQLLLALVECDKQH
HHHHCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA