| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence. |
|---|---|
| Accession | NC_011370 |
| Length | 308,747 |
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The map label for this gene is gabD [H]
Identifier: 209552187
GI number: 209552187
Start: 296615
End: 297316
Strand: Reverse
Name: gabD [H]
Synonym: Rleg2_6345
Alternate gene names: 209552187
Gene position: 297316-296615 (Counterclockwise)
Preceding gene: 209552188
Following gene: 209552186
Centisome position: 96.3
GC content: 60.4
Gene sequence:
>702_bases ATGAACGATTTTGCAAACGCGGCCGACTTCGGCGCGGCCACACTCGGTCAGAAGCTTCGCGAACCTTCTCTTTTCATCGA ACAAGCCTTCCTGCGAGGTCAATGGGCAGACGCGGACAGCGGAGAGACAATTAGTGTCTTCGATCCGGCTACGGGGCTAA GAATAGGGACTGTGCCCGCCATGGGCGCAGCCGAGGCGTCTCGGGTTATCGAGAAGGCTTATGCCGCATTCCGTGCCTGG GCCAGCGAGCCCGCTTTGAACCGCGCTCAGGTCATGGAGAAGTGGTTCGACCTCGTCACCGAGCATGCCGAAGACCTCGC CACGATCATAACGGTGGAGCAAGGCAAGCCCATCGCCGATCCTACCATCCTTACCGGGGCGCCATCGTCGATGCTGGTTG CTCGGGAAGAAACGTTCGGTCCGGTGGCTCCGCTGTTCCGTTTCACGCACATCGACGAGGCAATCAGGTTCGCCAACGAT ACCCCGTTCGGGCTCGCCGCATACGCGTTCTCAGAAAGCATGCATCGAACACTCCACGTCGGAGAGCGGCTCGAATTCGG GATGATAGGGCTCAACAGCGGGAGCGTTTCGTCGGAAGTCGCGCCGTTCGGTGGAATGAAAGAGTCCGGGATCGGCCGCG AAGGCGCAGGGCACGGGATGGACGAGTACCTGGACTCAAGACGATGCACATCGGCGGGATGA
Upstream 100 bases:
>100_bases CCCTCTGTTGCAGCGAAGAAGACATCGACACAATCATTCGCCGATTCCGATCCGTGCTGGACGAGCTCCTCGAGGTTAGA GAGATTCGGATGGCAGCAGC
Downstream 100 bases:
>100_bases ACCGGCCCTTGTAGCGGACAAATGAGCGGCGGATCCGATCCAAACCCGCCGCTCGCAATGCTCAATTCGAGCGGTTGAAA ATCATGGGACTTCGCAATGC
Product: aldehyde dehydrogenase
Products: NA
Alternate protein names: SSDH [H]
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MNDFANAADFGAATLGQKLREPSLFIEQAFLRGQWADADSGETISVFDPATGLRIGTVPAMGAAEASRVIEKAYAAFRAW ASEPALNRAQVMEKWFDLVTEHAEDLATIITVEQGKPIADPTILTGAPSSMLVAREETFGPVAPLFRFTHIDEAIRFAND TPFGLAAYAFSESMHRTLHVGERLEFGMIGLNSGSVSSEVAPFGGMKESGIGREGAGHGMDEYLDSRRCTSAG
Sequences:
>Translated_233_residues MNDFANAADFGAATLGQKLREPSLFIEQAFLRGQWADADSGETISVFDPATGLRIGTVPAMGAAEASRVIEKAYAAFRAW ASEPALNRAQVMEKWFDLVTEHAEDLATIITVEQGKPIADPTILTGAPSSMLVAREETFGPVAPLFRFTHIDEAIRFAND TPFGLAAYAFSESMHRTLHVGERLEFGMIGLNSGSVSSEVAPFGGMKESGIGREGAGHGMDEYLDSRRCTSAG >Mature_233_residues MNDFANAADFGAATLGQKLREPSLFIEQAFLRGQWADADSGETISVFDPATGLRIGTVPAMGAAEASRVIEKAYAAFRAW ASEPALNRAQVMEKWFDLVTEHAEDLATIITVEQGKPIADPTILTGAPSSMLVAREETFGPVAPLFRFTHIDEAIRFAND TPFGLAAYAFSESMHRTLHVGERLEFGMIGLNSGSVSSEVAPFGGMKESGIGREGAGHGMDEYLDSRRCTSAG
Specific function: Catalyzes the NADP(+) dependent oxidation of succinate semialdehyde to succinate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldehyde dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4507229, Length=154, Percent_Identity=40.9090909090909, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI25777721, Length=154, Percent_Identity=40.9090909090909, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI25777730, Length=110, Percent_Identity=38.1818181818182, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI153266822, Length=110, Percent_Identity=37.2727272727273, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI238814322, Length=150, Percent_Identity=30, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI25777726, Length=111, Percent_Identity=36.036036036036, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI25777724, Length=111, Percent_Identity=36.036036036036, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI21361176, Length=110, Percent_Identity=35.4545454545455, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI25777728, Length=111, Percent_Identity=36.036036036036, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI21614513, Length=113, Percent_Identity=35.3982300884956, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI25777732, Length=110, Percent_Identity=33.6363636363636, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI12007648, Length=110, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI25952152, Length=110, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI301500698, Length=110, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI115387104, Length=150, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI73695881, Length=114, Percent_Identity=36.8421052631579, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI73695879, Length=114, Percent_Identity=36.8421052631579, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI11095441, Length=93, Percent_Identity=36.5591397849462, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI1789015, Length=115, Percent_Identity=51.304347826087, Blast_Score=130, Evalue=6e-32, Organism=Escherichia coli, GI87081896, Length=107, Percent_Identity=34.5794392523364, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786504, Length=103, Percent_Identity=39.8058252427184, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787558, Length=103, Percent_Identity=33.9805825242718, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87081926, Length=105, Percent_Identity=36.1904761904762, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787684, Length=107, Percent_Identity=31.7757009345794, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787715, Length=108, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082295, Length=108, Percent_Identity=36.1111111111111, Blast_Score=68, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17534119, Length=106, Percent_Identity=42.4528301886792, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25144435, Length=110, Percent_Identity=37.2727272727273, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI32564736, Length=110, Percent_Identity=37.2727272727273, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17562198, Length=151, Percent_Identity=33.112582781457, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25143874, Length=103, Percent_Identity=42.7184466019417, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25143876, Length=103, Percent_Identity=42.7184466019417, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI133930964, Length=112, Percent_Identity=37.5, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551164, Length=107, Percent_Identity=34.5794392523364, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71995606, Length=97, Percent_Identity=39.1752577319588, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6319478, Length=111, Percent_Identity=47.7477477477478, Blast_Score=115, Evalue=5e-27, Organism=Saccharomyces cerevisiae, GI6323822, Length=107, Percent_Identity=37.3831775700935, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6323821, Length=107, Percent_Identity=37.3831775700935, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6320917, Length=107, Percent_Identity=31.7757009345794, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6324950, Length=107, Percent_Identity=33.6448598130841, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6325196, Length=94, Percent_Identity=35.1063829787234, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI281362580, Length=155, Percent_Identity=43.2258064516129, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI62472918, Length=155, Percent_Identity=43.2258064516129, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI62472926, Length=155, Percent_Identity=43.2258064516129, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI62472936, Length=155, Percent_Identity=43.2258064516129, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI21356737, Length=155, Percent_Identity=43.2258064516129, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI24650465, Length=112, Percent_Identity=34.8214285714286, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI20129399, Length=149, Percent_Identity=32.8859060402685, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24585660, Length=112, Percent_Identity=33.9285714285714, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24638876, Length=93, Percent_Identity=38.7096774193548, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24638878, Length=93, Percent_Identity=38.7096774193548, Blast_Score=68, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016160 - InterPro: IPR016162 - InterPro: IPR015590 - InterPro: IPR010102 [H]
Pfam domain/function: PF00171 Aldedh [H]
EC number: =1.2.1.79 [H]
Molecular weight: Translated: 24979; Mature: 24979
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDFANAADFGAATLGQKLREPSLFIEQAFLRGQWADADSGETISVFDPATGLRIGTVPA CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCC MGAAEASRVIEKAYAAFRAWASEPALNRAQVMEKWFDLVTEHAEDLATIITVEQGKPIAD CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC PTILTGAPSSMLVAREETFGPVAPLFRFTHIDEAIRFANDTPFGLAAYAFSESMHRTLHV CEEECCCCCHHEEECHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GERLEFGMIGLNSGSVSSEVAPFGGMKESGIGREGAGHGMDEYLDSRRCTSAG CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure MNDFANAADFGAATLGQKLREPSLFIEQAFLRGQWADADSGETISVFDPATGLRIGTVPA CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCC MGAAEASRVIEKAYAAFRAWASEPALNRAQVMEKWFDLVTEHAEDLATIITVEQGKPIAD CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC PTILTGAPSSMLVAREETFGPVAPLFRFTHIDEAIRFANDTPFGLAAYAFSESMHRTLHV CEEECCCCCHHEEECHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GERLEFGMIGLNSGSVSSEVAPFGGMKESGIGREGAGHGMDEYLDSRRCTSAG CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]