| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is ybiO [H]
Identifier: 209549384
GI number: 209549384
Start: 1837809
End: 1839959
Strand: Reverse
Name: ybiO [H]
Synonym: Rleg2_1790
Alternate gene names: 209549384
Gene position: 1839959-1837809 (Counterclockwise)
Preceding gene: 209549385
Following gene: 209549383
Centisome position: 40.55
GC content: 60.44
Gene sequence:
>2151_bases ATGCGCATCAACGACGACCGTCATTTTTTCGGCAGAGTGTCCACACTCCTGACGGTGGTATTTGCGACGCTTCTGTTCGC GAGCGTAACCGTCGCCCCAGCGGCCGAACCGACCAATTCCTCGGGACCGATCCGGGTTATCATCGAATTGCCGAACGATG ATGCCGGACGCGCGCTGGTCAACCGGATCGTTCCCGGCAATCAGGAGCCGGCGCAGCCGGCAGCGGCCCCGCAAGAGGCG GCACCGCCGTCGATTGCCACCGCATTGCAGGATTTGCGCCAGAGGTTGCTCACGCTCGTCGATGCCGTTCCAACGCTTCC GGGACAGGTTCAAACGGCGATCCGGGTCTTCCAAACGGATGATCGCATCGATGCTGTCGGACTGATCCTGGCGGTGACAC TCTTCATTGCAGGCGGATTCGCTGCCCAGCGCCTTGCCTGGTGGTCCGGGCGAGGGCTGCTTCATTTTGTGCTGACCGCG CCTGCCGACACTGTGCGGCAACGGATCAAGCTCCATGCGGCCCGGCTTTCAATGGGCCTTCTCGCGCTGGTCGGCTACCT CATCGGCAGCCTCGGCGCCTTTATCCTCTTTCCTTGGCCTGCCGTGTTTCGCGATATCGCGCTCATTCTGCTATCAGCGG CGCTGATGGTGCGCCTTGGCGTACTTGTCGGCCGCATCGTGATTGCGCCCGGTGCCCGGCTGCCGCATATGCGGCTTCTG ACGCTTGTCACCTCGCTTGCATGGTTCTGGTACTACTGGCTCCTCGCAATCGTCGCCGTGCTGGCAGTTGGCTGGGCGAT CATCGAAGTGTTCCAGACCATCGGGGCTTCGCCCATCCTGGTCGATCTCTTTACCGCCGCGTGGCTCGGTGTGGTTTCAA TCACGCTGATTGCCATGATTTGGCTGCGGCATTTCCGTTCCGACGGGCCGCCGGTAAACCGGCTGGTCTGCGTCGGCTTC AGCGCGAGCATCGTATTATCGTGGCTGTTGTGGGTGTCTGGGCTGCGCGGAGTATTCTGGACGTTGATCGTCTTGACCCT TCTGCCGCTTACCGTTTCCGTGGCGCGTGATGTCATCGGTCGCATTGTACGATCCGGCGGCGAGCACGCCGTCGAAGATC CGGCTATTGTCGGATGGTCGGTCGTCATCATGCAAACGCTCCGGAACGGACTGATCGTGGTCGCCGCACTGCTCATTGCT CGCGCGTGGAATGTCAATCTCAGTGACCTTGCCGCAGCCGAAACGGTGACCACCCGTTTGATTCGCGCAGGAATCCGCAT TGTTATCGTGCTGCTGGTTACCGACGTCATCTGGAAGCTCGCAAGCACGCTGATCGACAGTCAGATGGCGGTGGCGTCGA GAAGTGCGGAGGCGGGGCACCTGGATGGACCCGAAGCGCGCCGGCGTCAGCGGTTGAATACCCTGCTTCCCATCCTTCGC AATGTGCTGTTTCTGGCGATCGGCGCTGTCGGCTTCCTGATGATCCTGGATGCCGTCGGCATTCAGATCGGACCGTTGCT GGCCGGCGCCGGCGTCGTCGGCATCGCCGTCGGCTTCGGCGCACAAACACTCGTTAAGGATATCATCTCCGGCGTCTTCT ATCTGTTCGACGATGCCTTTCGCATCGGTGAGTATATTCAGGCGGCAAAATACAAAGGGACTGTCGAAGGTTTCTCGCTG CGATCGATCCGCCTGCGACACCACCGCGGTCCGGTCACCATCGTTCCTTTCGGCGAACTCGGCGCGGTGCAGAACCTGAG CCGCGACTGGGTGATCGATATCATCACGCTGACCCTGAACTATGACAGCGACCTTGAGGAAGTCCGCAAGACCATCAAGC GCATCGGCGTCGAGCTGCTGGACGATCCCGAACTCGGGCCCAACATCATCGAGCCCTTGAAAATGCAAGGGATCGAGCAG ATGGCGGACTACGGTGTGCAGATCCGGCTGAAGTTCATGGCCAAACCCGGCGAACAATTCGGCGTTCGCCGAAAGGCACT CGCCATGCTCAAGAAGACATTCGCGGAAAAAGGGATACAGTTTGCAACTCCGACGGTTCATGTTTCCAGCGGGACGGCCG ATGCAGCAGCTTCCGCCGCCGCTACGGAGCTACAAAGACCGGCAAAAGGGATCCCAACACTTCAGGACTAG
Upstream 100 bases:
>100_bases GCGTCCGCCAGACAGGTCGTCGATTGACGTCGATTACGCAACGCTTCACAACGTCCGAAGTTGCTAGAAACGACGCCAGC TTCGCGGGGACCAGGGCTAT
Downstream 100 bases:
>100_bases CTGCCTCGAGCACGGCGCAAGCTCAGTGAGAGTGGCCAGCAGATGACTGACGACGCTATGCCATTGTAATCAAATGGCAT TCTTATGTTCCATAATCTGT
Product: MscS Mechanosensitive ion channel
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MRINDDRHFFGRVSTLLTVVFATLLFASVTVAPAAEPTNSSGPIRVIIELPNDDAGRALVNRIVPGNQEPAQPAAAPQEA APPSIATALQDLRQRLLTLVDAVPTLPGQVQTAIRVFQTDDRIDAVGLILAVTLFIAGGFAAQRLAWWSGRGLLHFVLTA PADTVRQRIKLHAARLSMGLLALVGYLIGSLGAFILFPWPAVFRDIALILLSAALMVRLGVLVGRIVIAPGARLPHMRLL TLVTSLAWFWYYWLLAIVAVLAVGWAIIEVFQTIGASPILVDLFTAAWLGVVSITLIAMIWLRHFRSDGPPVNRLVCVGF SASIVLSWLLWVSGLRGVFWTLIVLTLLPLTVSVARDVIGRIVRSGGEHAVEDPAIVGWSVVIMQTLRNGLIVVAALLIA RAWNVNLSDLAAAETVTTRLIRAGIRIVIVLLVTDVIWKLASTLIDSQMAVASRSAEAGHLDGPEARRRQRLNTLLPILR NVLFLAIGAVGFLMILDAVGIQIGPLLAGAGVVGIAVGFGAQTLVKDIISGVFYLFDDAFRIGEYIQAAKYKGTVEGFSL RSIRLRHHRGPVTIVPFGELGAVQNLSRDWVIDIITLTLNYDSDLEEVRKTIKRIGVELLDDPELGPNIIEPLKMQGIEQ MADYGVQIRLKFMAKPGEQFGVRRKALAMLKKTFAEKGIQFATPTVHVSSGTADAAASAAATELQRPAKGIPTLQD
Sequences:
>Translated_716_residues MRINDDRHFFGRVSTLLTVVFATLLFASVTVAPAAEPTNSSGPIRVIIELPNDDAGRALVNRIVPGNQEPAQPAAAPQEA APPSIATALQDLRQRLLTLVDAVPTLPGQVQTAIRVFQTDDRIDAVGLILAVTLFIAGGFAAQRLAWWSGRGLLHFVLTA PADTVRQRIKLHAARLSMGLLALVGYLIGSLGAFILFPWPAVFRDIALILLSAALMVRLGVLVGRIVIAPGARLPHMRLL TLVTSLAWFWYYWLLAIVAVLAVGWAIIEVFQTIGASPILVDLFTAAWLGVVSITLIAMIWLRHFRSDGPPVNRLVCVGF SASIVLSWLLWVSGLRGVFWTLIVLTLLPLTVSVARDVIGRIVRSGGEHAVEDPAIVGWSVVIMQTLRNGLIVVAALLIA RAWNVNLSDLAAAETVTTRLIRAGIRIVIVLLVTDVIWKLASTLIDSQMAVASRSAEAGHLDGPEARRRQRLNTLLPILR NVLFLAIGAVGFLMILDAVGIQIGPLLAGAGVVGIAVGFGAQTLVKDIISGVFYLFDDAFRIGEYIQAAKYKGTVEGFSL RSIRLRHHRGPVTIVPFGELGAVQNLSRDWVIDIITLTLNYDSDLEEVRKTIKRIGVELLDDPELGPNIIEPLKMQGIEQ MADYGVQIRLKFMAKPGEQFGVRRKALAMLKKTFAEKGIQFATPTVHVSSGTADAAASAAATELQRPAKGIPTLQD >Mature_716_residues MRINDDRHFFGRVSTLLTVVFATLLFASVTVAPAAEPTNSSGPIRVIIELPNDDAGRALVNRIVPGNQEPAQPAAAPQEA APPSIATALQDLRQRLLTLVDAVPTLPGQVQTAIRVFQTDDRIDAVGLILAVTLFIAGGFAAQRLAWWSGRGLLHFVLTA PADTVRQRIKLHAARLSMGLLALVGYLIGSLGAFILFPWPAVFRDIALILLSAALMVRLGVLVGRIVIAPGARLPHMRLL TLVTSLAWFWYYWLLAIVAVLAVGWAIIEVFQTIGASPILVDLFTAAWLGVVSITLIAMIWLRHFRSDGPPVNRLVCVGF SASIVLSWLLWVSGLRGVFWTLIVLTLLPLTVSVARDVIGRIVRSGGEHAVEDPAIVGWSVVIMQTLRNGLIVVAALLIA RAWNVNLSDLAAAETVTTRLIRAGIRIVIVLLVTDVIWKLASTLIDSQMAVASRSAEAGHLDGPEARRRQRLNTLLPILR NVLFLAIGAVGFLMILDAVGIQIGPLLAGAGVVGIAVGFGAQTLVKDIISGVFYLFDDAFRIGEYIQAAKYKGTVEGFSL RSIRLRHHRGPVTIVPFGELGAVQNLSRDWVIDIITLTLNYDSDLEEVRKTIKRIGVELLDDPELGPNIIEPLKMQGIEQ MADYGVQIRLKFMAKPGEQFGVRRKALAMLKKTFAEKGIQFATPTVHVSSGTADAAASAAATELQRPAKGIPTLQD
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=320, Percent_Identity=30.9375, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1789291, Length=210, Percent_Identity=25.2380952380952, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 77448; Mature: 77448
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRINDDRHFFGRVSTLLTVVFATLLFASVTVAPAAEPTNSSGPIRVIIELPNDDAGRALV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHH NRIVPGNQEPAQPAAAPQEAAPPSIATALQDLRQRLLTLVDAVPTLPGQVQTAIRVFQTD HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC DRIDAVGLILAVTLFIAGGFAAQRLAWWSGRGLLHFVLTAPADTVRQRIKLHAARLSMGL CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH LALVGYLIGSLGAFILFPWPAVFRDIALILLSAALMVRLGVLVGRIVIAPGARLPHMRLL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH TLVTSLAWFWYYWLLAIVAVLAVGWAIIEVFQTIGASPILVDLFTAAWLGVVSITLIAMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WLRHFRSDGPPVNRLVCVGFSASIVLSWLLWVSGLRGVFWTLIVLTLLPLTVSVARDVIG HHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIVRSGGEHAVEDPAIVGWSVVIMQTLRNGLIVVAALLIARAWNVNLSDLAAAETVTTRL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IRAGIRIVIVLLVTDVIWKLASTLIDSQMAVASRSAEAGHLDGPEARRRQRLNTLLPILR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH NVLFLAIGAVGFLMILDAVGIQIGPLLAGAGVVGIAVGFGAQTLVKDIISGVFYLFDDAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RIGEYIQAAKYKGTVEGFSLRSIRLRHHRGPVTIVPFGELGAVQNLSRDWVIDIITLTLN HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCEEEEEEEEEC YDSDLEEVRKTIKRIGVELLDDPELGPNIIEPLKMQGIEQMADYGVQIRLKFMAKPGEQF CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHH GVRRKALAMLKKTFAEKGIQFATPTVHVSSGTADAAASAAATELQRPAKGIPTLQD HHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRINDDRHFFGRVSTLLTVVFATLLFASVTVAPAAEPTNSSGPIRVIIELPNDDAGRALV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHH NRIVPGNQEPAQPAAAPQEAAPPSIATALQDLRQRLLTLVDAVPTLPGQVQTAIRVFQTD HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC DRIDAVGLILAVTLFIAGGFAAQRLAWWSGRGLLHFVLTAPADTVRQRIKLHAARLSMGL CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH LALVGYLIGSLGAFILFPWPAVFRDIALILLSAALMVRLGVLVGRIVIAPGARLPHMRLL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH TLVTSLAWFWYYWLLAIVAVLAVGWAIIEVFQTIGASPILVDLFTAAWLGVVSITLIAMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WLRHFRSDGPPVNRLVCVGFSASIVLSWLLWVSGLRGVFWTLIVLTLLPLTVSVARDVIG HHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIVRSGGEHAVEDPAIVGWSVVIMQTLRNGLIVVAALLIARAWNVNLSDLAAAETVTTRL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IRAGIRIVIVLLVTDVIWKLASTLIDSQMAVASRSAEAGHLDGPEARRRQRLNTLLPILR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH NVLFLAIGAVGFLMILDAVGIQIGPLLAGAGVVGIAVGFGAQTLVKDIISGVFYLFDDAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RIGEYIQAAKYKGTVEGFSLRSIRLRHHRGPVTIVPFGELGAVQNLSRDWVIDIITLTLN HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCEEEEEEEEEC YDSDLEEVRKTIKRIGVELLDDPELGPNIIEPLKMQGIEQMADYGVQIRLKFMAKPGEQF CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHH GVRRKALAMLKKTFAEKGIQFATPTVHVSSGTADAAASAAATELQRPAKGIPTLQD HHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]