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The map label for this gene is 209549383

Identifier: 209549383

GI number: 209549383

Start: 1836121

End: 1837548

Strand: Reverse

Name: 209549383

Synonym: Rleg2_1789

Alternate gene names: NA

Gene position: 1837548-1836121 (Counterclockwise)

Preceding gene: 209549384

Following gene: 209549382

Centisome position: 40.49

GC content: 58.68

Gene sequence:

>1428_bases
ATGTCCTGTTTGATCACCATGTCGCAGAAAGAATTGCATCGCCTCGAAGTTGTTCAGAAGATCCGTGATCGACGCCTGAG
CGTCGTCCAGGCGACTGAGATGCTCGATCTCAGCCGAAGTCAGGTTCATAGGCTGCTGCAGGCTTATGATCGTTCCGGTG
AAGCCGGTCTTGTTTCGAAGAAGCGATCACGGCCGAGCAATCGGCGCCACAGCGAGGATTTTCGCAATGCGGCGCTGGAT
CTGATCCGCGAACGCTATCCGGATTTCGGTCCGACGTTAGCACGCGAGAAACTGATCGAACTGCATCAGATTTCGGTCGC
CAAGGAGACGTTACGCCAATGGATGACCGAGGCCGGCATCTGGATCTCGCGACGCGAACGCAAGAAGCGGATTTTTCAGC
CGCGCGGCCGGCGGGATTGTCTCGGCGAGCTCGTCCAGATCGACGGTTCGCATCACTGGTGGTTTGAGAACCGCGGTCCC
AAATGCGCCCTGCTCGTCTACATCGATGATGCTACCGGCAAGCTCTTGCATCTGCGGTTCGCCGGATCGGAGAACACCTT
CGACTACCTGCATGCGACGAAGGCCTATCTGCAGCAATGGGGCAAACCTCTGGCATTCTATAGCGACAAGCACGGTGTCT
TCCGCCCGGTCCATGCATCGGAGAAAGACCGGACGAGCGGCCTGACGCAGTTCGGTCGTGCCCTTTATGAGCTCAACATC
GATATCATCTGCGCCAACACCCCGCAGGCCAAAGGTCGCGTGGAACGCGCCAATCAGACGCTGCAGGATCGATTGGTCAA
GGAACTGCGGCTGCGCGGCATCGACACGATCGAGGCTGCAAACCTCTATGCACCGGCGTTCATTGCGGATTTCAATGCTC
GTTTCGGCAAGCCGCCGCGCAATCCGAAGGACATGCATCGGCCGCTGGCCGCACATGAGAACCTCGATGCCGCCATGTGC
CGGAAGGAGGTCCGCACGCTGTCGCAGTCCCTGACGCTACGCTACGACAAGGTCCTGTTCATCCTCGATCCGACGGAACA
GGCCAAGGCGCTGGCGGGTAAGAAGGTCGTCGTCTGCGACTATCCGGATGGTCGCCTCGAGATCATGCACGAGAGTTTTG
CCCTGCCCTACAGAACCTTCGATAAGTTGCGATCGATACATAGACCCGAAGTCGTCGACAACAAGCGTTTGGACGACATG
CTTTCGATCGTCGCTGAGCTGCAGGCTGGACGTGAACTGCAGCGCAGTAAGAGCGGCCCGCGCCGCACCGGTCAGACGGA
TCATATGTTTGGGATACCGGATGGTAGCCAGGGCAACGGTTATCAAAAGCGTGGTCGCAAGCCCGGCCCGCGGACGGACT
TCATGAACGATCCGGAAGTCATTGCCAAACGGCAGAAGGCGCTGGCGCGGATGGAGGCTGCCGAATGA

Upstream 100 bases:

>100_bases
ATGCGACAGTCTCGCCTCTCGACGTGCTGGTCAATGCCAACGTTGGGAGCAAGGATGACGACTTTCAGCCTGGTCGAGAC
CATGAGCGGTCGGAGTCGTC

Downstream 100 bases:

>100_bases
ACGGTGTCGCCATAGTCTCAAAGCTAAAGCCGAAGGGTGCCTCTCACCCGCCCCCTCCCTACCCTTGCAACCCGGACCAG
CCGGTTCGGTCGGGGGGCTG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALD
LIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRIFQPRGRRDCLGELVQIDGSHHWWFENRGP
KCALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPLAFYSDKHGVFRPVHASEKDRTSGLTQFGRALYELNI
DIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMC
RKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDM
LSIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGRKPGPRTDFMNDPEVIAKRQKALARMEAAE

Sequences:

>Translated_475_residues
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALD
LIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRIFQPRGRRDCLGELVQIDGSHHWWFENRGP
KCALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPLAFYSDKHGVFRPVHASEKDRTSGLTQFGRALYELNI
DIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMC
RKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDM
LSIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGRKPGPRTDFMNDPEVIAKRQKALARMEAAE
>Mature_474_residues
SCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALDL
IRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRIFQPRGRRDCLGELVQIDGSHHWWFENRGPK
CALLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQWGKPLAFYSDKHGVFRPVHASEKDRTSGLTQFGRALYELNID
IICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMCR
KEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDML
SIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGRKPGPRTDFMNDPEVIAKRQKALARMEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 54629; Mature: 54498

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSK
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHH
KRSRPSNRRHSEDFRNAALDLIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGI
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WISRRERKKRIFQPRGRRDCLGELVQIDGSHHWWFENRGPKCALLVYIDDATGKLLHLRF
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEE
AGSENTFDYLHATKAYLQQWGKPLAFYSDKHGVFRPVHASEKDRTSGLTQFGRALYELNI
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE
DIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIEAANLYAPAFIADFNARFGKPPR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCHHHCCCCCC
NPKDMHRPLAAHENLDAAMCRKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCD
CHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHCCCEEEEEE
YPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDMLSIVAELQAGRELQRSKSGP
CCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RRTGQTDHMFGIPDGSQGNGYQKRGRKPGPRTDFMNDPEVIAKRQKALARMEAAE
CCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSK
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHH
KRSRPSNRRHSEDFRNAALDLIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGI
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WISRRERKKRIFQPRGRRDCLGELVQIDGSHHWWFENRGPKCALLVYIDDATGKLLHLRF
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEE
AGSENTFDYLHATKAYLQQWGKPLAFYSDKHGVFRPVHASEKDRTSGLTQFGRALYELNI
CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE
DIICANTPQAKGRVERANQTLQDRLVKELRLRGIDTIEAANLYAPAFIADFNARFGKPPR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHCCCHHHCCCCCC
NPKDMHRPLAAHENLDAAMCRKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCD
CHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHCCCEEEEEE
YPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDMLSIVAELQAGRELQRSKSGP
CCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RRTGQTDHMFGIPDGSQGNGYQKRGRKPGPRTDFMNDPEVIAKRQKALARMEAAE
CCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]