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The map label for this gene is uxuR [H]

Identifier: 209549288

GI number: 209549288

Start: 1721392

End: 1722102

Strand: Reverse

Name: uxuR [H]

Synonym: Rleg2_1691

Alternate gene names: 209549288

Gene position: 1722102-1721392 (Counterclockwise)

Preceding gene: 209549294

Following gene: 209549287

Centisome position: 37.95

GC content: 63.71

Gene sequence:

>711_bases
ATGACGATACTCAGCCGCGGCCGGCAAAGACTGGCGCAACAGGTCATCGATCAGCTGCGGGCGCAGATCGAGACGGGCAT
GCTGCGGGTCGGCGACCAGCTGCCGACCGAGCCCCAGCTCGAAGCAACCTTCGGGGTCAGCCGCACCGTGGTACGCGAGG
CGATTGCCGACCTCAGGTCGGCGGGCTTCGTCAAGCCGATCCAGGGCAAAGGCGTGTTTGTCGCGGACCCGAAGGCAAAT
TCTGTCCTGTCATTGACGCCGGTTGAGATCAAAAGCATTCCGGAAACCCTTGAATTGCTGGAGTTTCGCATGGCGGCCGA
GGGTGAAGCGGCGGCCATCGCCGCCTATCGCCGCACCGCCGAGCAGGAGGCGGCGATCCGTGAGGCCAACCGCCGCATGG
CGAACCTGATCGAGACCGGGCAGCAGACGGTGGAGGCGGATTACGCCTTCCACATGGCGATCGCCGCCGCCACCAACAAC
CGATTCTACGTCGATGTTCTGCGCCAATTCGGCCCCAAGGCCATCCCCCGCGGCCAGTTTCCGACACTGCCAGAGGCCAA
TGACCGCGACTATCTGCAGAAGGTCTATGCCGAGCATGTCGAGATCCTCTCGGCCATCGCCGATCAGGATCCCGATCGCG
CCCGCCAGGCCATGCGCGCGCATATGATGGCCAGCCAACGTCGTTATCGGATGCTTTCCGAGCAGCAATAG

Upstream 100 bases:

>100_bases
TTATGTCGCCCGTATGTCGTATTATGATCTATCGAAGTCTGATACGGTTGACAAGGCCCGAGCGGGAGACTTGAGTGCAA
AGGGATTGGGGAACGGAAAA

Downstream 100 bases:

>100_bases
GGCTCGACTCTCTTCAAAATTCATATTATGTCATATGACATTGTGTAATTTCGAAAGAGACTCAAATGTATCTGGGAACA
CAGGTCGCCGCGCGGGATGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTILSRGRQRLAQQVIDQLRAQIETGMLRVGDQLPTEPQLEATFGVSRTVVREAIADLRSAGFVKPIQGKGVFVADPKAN
SVLSLTPVEIKSIPETLELLEFRMAAEGEAAAIAAYRRTAEQEAAIREANRRMANLIETGQQTVEADYAFHMAIAAATNN
RFYVDVLRQFGPKAIPRGQFPTLPEANDRDYLQKVYAEHVEILSAIADQDPDRARQAMRAHMMASQRRYRMLSEQQ

Sequences:

>Translated_236_residues
MTILSRGRQRLAQQVIDQLRAQIETGMLRVGDQLPTEPQLEATFGVSRTVVREAIADLRSAGFVKPIQGKGVFVADPKAN
SVLSLTPVEIKSIPETLELLEFRMAAEGEAAAIAAYRRTAEQEAAIREANRRMANLIETGQQTVEADYAFHMAIAAATNN
RFYVDVLRQFGPKAIPRGQFPTLPEANDRDYLQKVYAEHVEILSAIADQDPDRARQAMRAHMMASQRRYRMLSEQQ
>Mature_235_residues
TILSRGRQRLAQQVIDQLRAQIETGMLRVGDQLPTEPQLEATFGVSRTVVREAIADLRSAGFVKPIQGKGVFVADPKANS
VLSLTPVEIKSIPETLELLEFRMAAEGEAAAIAAYRRTAEQEAAIREANRRMANLIETGQQTVEADYAFHMAIAAATNNR
FYVDVLRQFGPKAIPRGQFPTLPEANDRDYLQKVYAEHVEILSAIADQDPDRARQAMRAHMMASQRRYRMLSEQQ

Specific function: Repressor for the uxuRBA operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=250, Percent_Identity=30.8, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786303, Length=229, Percent_Identity=34.4978165938865, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082208, Length=221, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789353, Length=229, Percent_Identity=29.6943231441048, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790780, Length=225, Percent_Identity=28.4444444444444, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789621, Length=222, Percent_Identity=28.3783783783784, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786950, Length=86, Percent_Identity=39.5348837209302, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26412; Mature: 26280

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILSRGRQRLAQQVIDQLRAQIETGMLRVGDQLPTEPQLEATFGVSRTVVREAIADLRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AGFVKPIQGKGVFVADPKANSVLSLTPVEIKSIPETLELLEFRMAAEGEAAAIAAYRRTA
CCCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
EQEAAIREANRRMANLIETGQQTVEADYAFHMAIAAATNNRFYVDVLRQFGPKAIPRGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
PTLPEANDRDYLQKVYAEHVEILSAIADQDPDRARQAMRAHMMASQRRYRMLSEQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TILSRGRQRLAQQVIDQLRAQIETGMLRVGDQLPTEPQLEATFGVSRTVVREAIADLRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AGFVKPIQGKGVFVADPKANSVLSLTPVEIKSIPETLELLEFRMAAEGEAAAIAAYRRTA
CCCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
EQEAAIREANRRMANLIETGQQTVEADYAFHMAIAAATNNRFYVDVLRQFGPKAIPRGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
PTLPEANDRDYLQKVYAEHVEILSAIADQDPDRARQAMRAHMMASQRRYRMLSEQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]