Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695901
Identifier: 209695901
GI number: 209695901
Start: 2655827
End: 2656576
Strand: Reverse
Name: 209695901
Synonym: VSAL_I2481
Alternate gene names: NA
Gene position: 2656576-2655827 (Counterclockwise)
Preceding gene: 209695902
Following gene: 209695898
Centisome position: 79.89
GC content: 34.4
Gene sequence:
>750_bases ATGCGTACTTTATATCAACATGCCGACTACTCAGTAGCTCTTCAAAACTTTAATAGCAGTAGTCCAAAGAAATGGTCTAA GTTCCAAGGAGTTCACCTTGCGGTTACTAATCATAGGTGTCCAATTTGTGAATGTACTTTAAAAAATGGGCAACTGTTAA TGAGAGCTAGTAGTAAGCCTGGTAAGCCTCCTGTCCAAGTTAAAGCTACTGTTGATCATTATCGACCGCAAAAGTATTAT CCTTTTCTAGAGTTTGAGGATAAAAATTATATTTTAATGTGCTCTGAATGTAATAATATTTATAAAGGCTCGGAATTCCC AATATTTGGCGTTCAGGTAACGAGAGCAACCAGTGTTGCAGGATTAGCAACAGAACAACCACTTATAGCTAATCCTGTTA GTGATAATATATTCGATTTATTTAAAGTCGTTGCTAGGCGTTTAACAAATGGGCGAAAGGTTCTAGAGTTAACGCCTAAA CATACATCTGGTTATCTGCATGAGAAAGCTTTAGCCACAATTAAACTATTCGGTATAGGGGAGTGTGAAGTTAATGCACA TTCTAATGTTAATATTAAAGCATTGAGAGTTAATCTACTTCGCAGCCATTTTTCAATGTTTGAAGATTTCATTAATGCTT ATGAAAATAAAGATGTACCTAAAATGCGAAGTGAAATCACGAGAAAAAAATTAGATTCATACGGTTTCTTGAAAATTATA CTTGCTAATAATGTAACAAACCTAACTTAA
Upstream 100 bases:
>100_bases AAAAATAACAAGCACATCAGTTATGAACAATATGAAGCTTCTTCAGAGCAGGATATGGCAGACTTCTTAAGTGAGTTTGG AGGCTCATTCAATGATTGAT
Downstream 100 bases:
>100_bases GAAATGATTAAATATCGTACTCTAATCTATTGTCGCGGGGAGTTGTTGTGAGATGATAACTAAAATAACTGAGCTGAAGT TCCTTTTTATCGTTTAGGGT
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MRTLYQHADYSVALQNFNSSSPKKWSKFQGVHLAVTNHRCPICECTLKNGQLLMRASSKPGKPPVQVKATVDHYRPQKYY PFLEFEDKNYILMCSECNNIYKGSEFPIFGVQVTRATSVAGLATEQPLIANPVSDNIFDLFKVVARRLTNGRKVLELTPK HTSGYLHEKALATIKLFGIGECEVNAHSNVNIKALRVNLLRSHFSMFEDFINAYENKDVPKMRSEITRKKLDSYGFLKII LANNVTNLT
Sequences:
>Translated_249_residues MRTLYQHADYSVALQNFNSSSPKKWSKFQGVHLAVTNHRCPICECTLKNGQLLMRASSKPGKPPVQVKATVDHYRPQKYY PFLEFEDKNYILMCSECNNIYKGSEFPIFGVQVTRATSVAGLATEQPLIANPVSDNIFDLFKVVARRLTNGRKVLELTPK HTSGYLHEKALATIKLFGIGECEVNAHSNVNIKALRVNLLRSHFSMFEDFINAYENKDVPKMRSEITRKKLDSYGFLKII LANNVTNLT >Mature_249_residues MRTLYQHADYSVALQNFNSSSPKKWSKFQGVHLAVTNHRCPICECTLKNGQLLMRASSKPGKPPVQVKATVDHYRPQKYY PFLEFEDKNYILMCSECNNIYKGSEFPIFGVQVTRATSVAGLATEQPLIANPVSDNIFDLFKVVARRLTNGRKVLELTPK HTSGYLHEKALATIKLFGIGECEVNAHSNVNIKALRVNLLRSHFSMFEDFINAYENKDVPKMRSEITRKKLDSYGFLKII LANNVTNLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28277; Mature: 28277
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLYQHADYSVALQNFNSSSPKKWSKFQGVHLAVTNHRCPICECTLKNGQLLMRASSKP CCCCHHCCCEEEEEECCCCCCCCCHHHHCCEEEEEECCCCCEEEEEECCCEEEEEECCCC GKPPVQVKATVDHYRPQKYYPFLEFEDKNYILMCSECNNIYKGSEFPIFGVQVTRATSVA CCCCEEEEEEHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCC GLATEQPLIANPVSDNIFDLFKVVARRLTNGRKVLELTPKHTSGYLHEKALATIKLFGIG CCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHEEEEEEEECC ECEVNAHSNVNIKALRVNLLRSHFSMFEDFINAYENKDVPKMRSEITRKKLDSYGFLKII EEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEE LANNVTNLT EECCCCCCC >Mature Secondary Structure MRTLYQHADYSVALQNFNSSSPKKWSKFQGVHLAVTNHRCPICECTLKNGQLLMRASSKP CCCCHHCCCEEEEEECCCCCCCCCHHHHCCEEEEEECCCCCEEEEEECCCEEEEEECCCC GKPPVQVKATVDHYRPQKYYPFLEFEDKNYILMCSECNNIYKGSEFPIFGVQVTRATSVA CCCCEEEEEEHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCC GLATEQPLIANPVSDNIFDLFKVVARRLTNGRKVLELTPKHTSGYLHEKALATIKLFGIG CCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHEEEEEEEECC ECEVNAHSNVNIKALRVNLLRSHFSMFEDFINAYENKDVPKMRSEITRKKLDSYGFLKII EEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEE LANNVTNLT EECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA