Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is yfjG [C]
Identifier: 209695898
GI number: 209695898
Start: 2652761
End: 2653198
Strand: Reverse
Name: yfjG [C]
Synonym: VSAL_I2478
Alternate gene names: 209695898
Gene position: 2653198-2652761 (Counterclockwise)
Preceding gene: 209695901
Following gene: 209695897
Centisome position: 79.79
GC content: 37.67
Gene sequence:
>438_bases ATGCCTCAGGTTAGCCGTTCTGCATTAGTACCTTTCAGTGCAAAGCAGATGTATGATTTAGTCAATGATGTTGCGTCTTA TCCTCAGTTCTTACCCGGGTGCTCTGGTTCTAAGATCATAGAACAAACAGAATGTTCTATGATAGCGTCGGTCGATGTAG CAAAAGCAGGCATAAAGAAGACGTTTATTACCGAAAATACGTTAGTTGATGCTCAAATCATAGGAATGAACTTGGTTGAT GGGCCTTTTAAATCATTAACGGGTGGATGGCATTTTACTGAATTAGATGAAACGGCGTGTAAAGTAGAACTAAAATTAGA TTTTGAATTTACCAACGCGTTAGTAGCAATGGCATTTGGTAAAGTTTTTCAAGAGCTTACTAATAATATGGTGAATTCAT TTACCCAGCGAGCGAAGCAGATTTATGTCAATAATTAA
Upstream 100 bases:
>100_bases ATGCCCACATTATACGTTATTAGTTGAGAATAGGGGAAGTAGTTTGGCTCTTAACATCAAGATGGTATGATGCAACCCTC TATTATGTAAAGGAGAATTT
Downstream 100 bases:
>100_bases CGAGATGATACATGTTGAAGTGGTGTATGCCTTGCCAACAGAGCAAGTGGTTTTTAAACTTGCCGTAAAAGCAGATCAAA CCGTTCAAGAGATCATTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MPQVSRSALVPFSAKQMYDLVNDVASYPQFLPGCSGSKIIEQTECSMIASVDVAKAGIKKTFITENTLVDAQIIGMNLVD GPFKSLTGGWHFTELDETACKVELKLDFEFTNALVAMAFGKVFQELTNNMVNSFTQRAKQIYVNN
Sequences:
>Translated_145_residues MPQVSRSALVPFSAKQMYDLVNDVASYPQFLPGCSGSKIIEQTECSMIASVDVAKAGIKKTFITENTLVDAQIIGMNLVD GPFKSLTGGWHFTELDETACKVELKLDFEFTNALVAMAFGKVFQELTNNMVNSFTQRAKQIYVNN >Mature_144_residues PQVSRSALVPFSAKQMYDLVNDVASYPQFLPGCSGSKIIEQTECSMIASVDVAKAGIKKTFITENTLVDAQIIGMNLVDG PFKSLTGGWHFTELDETACKVELKLDFEFTNALVAMAFGKVFQELTNNMVNSFTQRAKQIYVNN
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Escherichia coli, GI1788972, Length=142, Percent_Identity=65.4929577464789, Blast_Score=207, Evalue=3e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 16000; Mature: 15868
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQVSRSALVPFSAKQMYDLVNDVASYPQFLPGCSGSKIIEQTECSMIASVDVAKAGIKK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH TFITENTLVDAQIIGMNLVDGPFKSLTGGWHFTELDETACKVELKLDFEFTNALVAMAFG HHCCCCCEECCEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH KVFQELTNNMVNSFTQRAKQIYVNN HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PQVSRSALVPFSAKQMYDLVNDVASYPQFLPGCSGSKIIEQTECSMIASVDVAKAGIKK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH TFITENTLVDAQIIGMNLVDGPFKSLTGGWHFTELDETACKVELKLDFEFTNALVAMAFG HHCCCCCEECCEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH KVFQELTNNMVNSFTQRAKQIYVNN HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA