Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695868
Identifier: 209695868
GI number: 209695868
Start: 2616815
End: 2617444
Strand: Reverse
Name: 209695868
Synonym: VSAL_I2444
Alternate gene names: NA
Gene position: 2617444-2616815 (Counterclockwise)
Preceding gene: 209695873
Following gene: 209695867
Centisome position: 78.72
GC content: 35.71
Gene sequence:
>630_bases ATGAAAAAGTATTTGTTTTTACTAATGGCTGCAACCTCAACAAGCGTATTCGCAGCACCATACGTAGGCTTAGAATATGG CGTAACAAACATGAGCCATGATTACTCTACGACTTTTTCAGATAATGTGTCTCTAACGCCTGATGATTCAAGTTCCGCTT TTGGTGGTTTTGTTGGTTATCGTTTTAACGAGTTTGGTTTAGAACTAGGTTATAAGAAATTTGAGAGTGATGACTCTAAT AGTAAGAGATTATCTTATGTTCCACCTGTAGAAACAGAACGCGAGTGGAATGCTGATTTAGATGCGACTCAATTTACATT GAAACCAGTCTATTTTCATAATTTCAATGAGAAATTACAATTAAAAATAGGTCTAGGTTTAACGTATACTCAATATAAAT ATGATTCATCAGCGTATACAGAAACGGAAAATGATTTAACAGATCAAGAGTCAATTTCTGATTATGAACATGGAACGTCT AAATCAGAAAGTGTATTTGGTGCTATCGCAAGCGTAGGCATTGAATACATGGTGATCCCAAACCTAGCATTGGGCGCATC AGCAAGCTACCAAGTAGATAATATTGCGAATTCATCTTCATTCATGTTGAGTTCAGCTTACTACTTCTAA
Upstream 100 bases:
>100_bases AGAGAGAATCTTCACACTTTCTTCACGATCTCTTCTTTATAGTATTCATATTGCGAATTAAGACCAAACTCAACACGATA ACGATAGGATTAAATTTATA
Downstream 100 bases:
>100_bases TATGTAGTCATAGAAATTCATTAATCAAATTGGAAATAAATAAAATGAAAAAAATTATATTAGTAAGTGCATTAGTATTG GCATCATCAAGTGCGTTTGC
Product: accessory colonization factor precursor AcfA
Products: NA
Alternate protein names: Accessory Colonization Factor AcfA-Like Protein; Accessory Colonization Factor AcfA
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MKKYLFLLMAATSTSVFAAPYVGLEYGVTNMSHDYSTTFSDNVSLTPDDSSSAFGGFVGYRFNEFGLELGYKKFESDDSN SKRLSYVPPVETEREWNADLDATQFTLKPVYFHNFNEKLQLKIGLGLTYTQYKYDSSAYTETENDLTDQESISDYEHGTS KSESVFGAIASVGIEYMVIPNLALGASASYQVDNIANSSSFMLSSAYYF
Sequences:
>Translated_209_residues MKKYLFLLMAATSTSVFAAPYVGLEYGVTNMSHDYSTTFSDNVSLTPDDSSSAFGGFVGYRFNEFGLELGYKKFESDDSN SKRLSYVPPVETEREWNADLDATQFTLKPVYFHNFNEKLQLKIGLGLTYTQYKYDSSAYTETENDLTDQESISDYEHGTS KSESVFGAIASVGIEYMVIPNLALGASASYQVDNIANSSSFMLSSAYYF >Mature_209_residues MKKYLFLLMAATSTSVFAAPYVGLEYGVTNMSHDYSTTFSDNVSLTPDDSSSAFGGFVGYRFNEFGLELGYKKFESDDSN SKRLSYVPPVETEREWNADLDATQFTLKPVYFHNFNEKLQLKIGLGLTYTQYKYDSSAYTETENDLTDQESISDYEHGTS KSESVFGAIASVGIEYMVIPNLALGASASYQVDNIANSSSFMLSSAYYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23307; Mature: 23307
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYLFLLMAATSTSVFAAPYVGLEYGVTNMSHDYSTTFSDNVSLTPDDSSSAFGGFVGY CCCEEEEEEEECCCCEEECCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEC RFNEFGLELGYKKFESDDSNSKRLSYVPPVETEREWNADLDATQFTLKPVYFHNFNEKLQ EEHHHCHHCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEE LKIGLGLTYTQYKYDSSAYTETENDLTDQESISDYEHGTSKSESVFGAIASVGIEYMVIP EEEECCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEC NLALGASASYQVDNIANSSSFMLSSAYYF CEEECCCCCEEECCCCCCCCEEEEEEECC >Mature Secondary Structure MKKYLFLLMAATSTSVFAAPYVGLEYGVTNMSHDYSTTFSDNVSLTPDDSSSAFGGFVGY CCCEEEEEEEECCCCEEECCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEC RFNEFGLELGYKKFESDDSNSKRLSYVPPVETEREWNADLDATQFTLKPVYFHNFNEKLQ EEHHHCHHCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEE LKIGLGLTYTQYKYDSSAYTETENDLTDQESISDYEHGTSKSESVFGAIASVGIEYMVIP EEEECCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEC NLALGASASYQVDNIANSSSFMLSSAYYF CEEECCCCCEEECCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA