Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695873
Identifier: 209695873
GI number: 209695873
Start: 2621279
End: 2621854
Strand: Reverse
Name: 209695873
Synonym: VSAL_I2450
Alternate gene names: NA
Gene position: 2621854-2621279 (Counterclockwise)
Preceding gene: 209695874
Following gene: 209695868
Centisome position: 78.85
GC content: 39.24
Gene sequence:
>576_bases ATGAAGGGAAATATTATGAATAAAGTTTTAGTTGGTACGTGTGCTGCATTATCGTTAATGTCATCAGCAGTAATGGCTGA TAGTACGCCTGTGATGTTCTCATCATTAAATGGCTTTAATGCCCCTGCAGCAAGTGAAGTTAAAGGTGTTCGCCTTGCCG CTTTACATGGCAAAACGGGTGATGTAACTGGTGTTGATTTCGCATTAGGTATGTCTGAAAGTGATAATTTAACTGGTGTT AACTTCCCTCTGTTTATTGGTGCAAACAAAGTTAATGGCAACATGACGGGCGCATCTTTTGGCTTATTCAATTGGCATAA AGGCGAAGATGTTGGTGCTAACTTAGGTTTTGTTAACATTACGAACGATGTGACTGGTGCTAACCTTTCTGCAGTAAACT ACTCAGAAGGTTACACAATGGTTGATGTTGGTGTTGCAAACCTTTCAAATGATTCACATGTTCAAGTTGGTTTATTTAAT ATGACATCTGACATTAAAGGTGTTCAGATCGGTCTTATCAACTGTGCGGAAAACGGTTTCCTACCTTGCTTTCCATTCGT AAACTTTGCGATGTAA
Upstream 100 bases:
>100_bases TTTATCATTCGAACAGAGTATATTATGAACTATTGCATAAACTTTATGCGATGCATGAGATATATAAATCGAATAAATAG ATCTTAGTAATCCTAAAATA
Downstream 100 bases:
>100_bases GTTGATTTAAAAAATTAAATAAAAATGGCGCTGCTTTATTACAAAGCCGCGCCATTTTTGTATCTGTTTAATTAATATGT GGTTGGTATTAAAAAGTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MKGNIMNKVLVGTCAALSLMSSAVMADSTPVMFSSLNGFNAPAASEVKGVRLAALHGKTGDVTGVDFALGMSESDNLTGV NFPLFIGANKVNGNMTGASFGLFNWHKGEDVGANLGFVNITNDVTGANLSAVNYSEGYTMVDVGVANLSNDSHVQVGLFN MTSDIKGVQIGLINCAENGFLPCFPFVNFAM
Sequences:
>Translated_191_residues MKGNIMNKVLVGTCAALSLMSSAVMADSTPVMFSSLNGFNAPAASEVKGVRLAALHGKTGDVTGVDFALGMSESDNLTGV NFPLFIGANKVNGNMTGASFGLFNWHKGEDVGANLGFVNITNDVTGANLSAVNYSEGYTMVDVGVANLSNDSHVQVGLFN MTSDIKGVQIGLINCAENGFLPCFPFVNFAM >Mature_191_residues MKGNIMNKVLVGTCAALSLMSSAVMADSTPVMFSSLNGFNAPAASEVKGVRLAALHGKTGDVTGVDFALGMSESDNLTGV NFPLFIGANKVNGNMTGASFGLFNWHKGEDVGANLGFVNITNDVTGANLSAVNYSEGYTMVDVGVANLSNDSHVQVGLFN MTSDIKGVQIGLINCAENGFLPCFPFVNFAM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19830; Mature: 19830
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGNIMNKVLVGTCAALSLMSSAVMADSTPVMFSSLNGFNAPAASEVKGVRLAALHGKTG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC DVTGVDFALGMSESDNLTGVNFPLFIGANKVNGNMTGASFGLFNWHKGEDVGANLGFVNI CCCCEEEEECCCCCCCCCCCCEEEEEECEECCCCCCCCEECCCCCCCCCCCCCCCEEEEE TNDVTGANLSAVNYSEGYTMVDVGVANLSNDSHVQVGLFNMTSDIKGVQIGLINCAENGF CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC LPCFPFVNFAM EECHHHHHHCC >Mature Secondary Structure MKGNIMNKVLVGTCAALSLMSSAVMADSTPVMFSSLNGFNAPAASEVKGVRLAALHGKTG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC DVTGVDFALGMSESDNLTGVNFPLFIGANKVNGNMTGASFGLFNWHKGEDVGANLGFVNI CCCCEEEEECCCCCCCCCCCCEEEEEECEECCCCCCCCEECCCCCCCCCCCCCCCEEEEE TNDVTGANLSAVNYSEGYTMVDVGVANLSNDSHVQVGLFNMTSDIKGVQIGLINCAENGF CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC LPCFPFVNFAM EECHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA