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The map label for this gene is secD [H]

Identifier: 209695857

GI number: 209695857

Start: 2604648

End: 2606504

Strand: Reverse

Name: secD [H]

Synonym: VSAL_I2433

Alternate gene names: 209695857

Gene position: 2606504-2604648 (Counterclockwise)

Preceding gene: 209695858

Following gene: 209695856

Centisome position: 78.39

GC content: 42.54

Gene sequence:

>1857_bases
GTGTTAAACCGTTTCCCTTTATGGAAGTATTTGATGGTAGTTTCTGTACTACTTATCGCCGCTCTGTATGCGCTTCCAAA
CCTTTATGGTGAAGATCCAGCCGTTCAAATCACGGGTAGTCGTGGTGCTGAGGTTCAAACCTCTACGCTGGATGTCGTTG
CTGAAAATTTAAAAAACAATAACATCGCTTATAAGTCTATTGCATTCGAAAATGGCAGTGTTCTTGTTCGCTTTAAAGAT
ACTGACTCTCAGATCAGTGCCAGAGATATTATTAGCCAGTCATTAGGTAAATATTACGTAGTGGCGTTAAACCTTGCTGC
ACTAACGCCTGATTGGTTAACGTCCATTGGTGCTAAACCAATGAAGTTAGGCTTAGATTTACGTGGTGGTGTTCACTTCT
TAATGGAAGTGGATATGGATGCCGCAATGAGCAAACTTGTCGGCCAGCAAGAAGAATCTTTCCGTACTGATTTACGAGAA
GCGAAGATCCGTTATCGTGCTATTCGCAGTTCAGGTAAAGAAAGTGTTGAAGTTGTTCTTCGTAATGCAGAGCAACTAGA
AGAAGCCAAGAATGTATTATCAGATGCGCATCGTGATATGACGTTTGTTGATTCGGAATCAAATGGCCAATTTAAATTAA
TAGCAAGTTTTACTGATCAGCGTTTACAAGAGATCCGTAATTATGCGGTTGAGCAAAATATCACGATTATCCGTAATCGT
GTTAATGAACTTGGTGTTGCTGAACCATTAGTTCAACGTCAAGGTGCAAGCCGAATTGTGGTTGAATTACCCGGTGTTCA
AGACACCGCTCGTGCAAAAGAAATTTTAGGTGCAACGGCGACACTTGAGTTCCGCGAAGTGGATGACAAAGCGGATTTGT
CGGCTGCAGCTAATGGCCGAGCACCGGCAGGAAGCGAAATAAAAGAAGATCGAAATGGTCGTCCTGTTGTTCTTAAGAAA
CGTATTATTCTTGGTGGAGCGAGCATTACAGATGCAAGTTCAAGTGCTGATGAATATGGTCGTCCTCAAGTTAACATCTC
ACTAGACAGTGAAGGTGGCAGTAAGATGACGGCGTTCTCTCGTAAAAATATCGGTAAGCTAATGGCAACCGTATTTACAG
AGTATAAAGACAGCGGTCGTCGCACGCCTGAAGGTCGCGTTATTCTTGCTAAGACAGAAGAAGTGATTAACCAAGCAACG
ATTCAATCAGCTCTTGGTCGTAGTTTCCGTATTACGGGTATTGATTCTCAAGCTGAAGCTCATAACTTAGCACTTCTTCT
TCGTGCTGGTGCACTAATTGCGCCAATCTCGATTGTTGAAGAACGCACGATTGGTCCATCAATGGGTCAGCAGAATATTG
ATATGGGTGTTCAAGCGTGTATTTGGGGTATGGTAGCCGTAATGCTATTTACTCTAATTTATTATCGTGGCTTTGGTTTG
GTTGCTAACTTAGCGCTTGCCGCTAACTTGGTACTTATCATTGGTGTTATGTCGATGATCCCTGGAGCGACAATGACGCT
TCCTGGTATTGCCGGTATTGTATTAACTGTTGGTATGGCCGTGGATGCAAACGTACTTATCTTTGAACGTATTCGTGAAG
AGTTAAGAGATGGACGTAATCCGCAACAAGCGATTCATCAAGGTTATGCAAACGCATTCAGTACGATTGCTGATGCAAAC
ATCACGACATTAATTACAGCGATTATCTTATTTGCTGTAGGTACTGGTGCGATCAAAGGCTTTGCAGTAACGCTATCAAT
TGGTATTTTGACTTCAATGTTTACGGCTATCGTCGGTACTCGTTGTGTTATTAACTTAGTTTACGGCGGTAAGCGCGTAG
ACAAACTGTCGATCTAA

Upstream 100 bases:

>100_bases
ATTTTGTTTCAGCGGTTCTGCCAAAGGGCACTCTGAAATCACTATAAAAACTGTACCCTCTAACTTCGGTTAGAGGGTAT
TTTTCGTTAAGGACATCGCT

Downstream 100 bases:

>100_bases
GGGAATATTTGTCATGTTTCAAATAATGAAAGCAGAGAAAACGATCGACTTTATGCGTTGGTCTAAGCCTGCCTTTTTCT
TCTCCATGCTGATGATTGTA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKD
TDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLRE
AKIRYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKK
RIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQAT
IQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL
VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI

Sequences:

>Translated_618_residues
MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKD
TDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLRE
AKIRYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKK
RIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQAT
IQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL
VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI
>Mature_618_residues
MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKD
TDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLRE
AKIRYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKK
RIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQAT
IQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL
VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=61.8122977346278, Blast_Score=773, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66915; Mature: 66915

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCC
NIAYKSIAFENGSVLVRFKDTDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKP
CEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEHHHCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLREAKIRYRAIRSSGKESVEVVL
EEECCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHH
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGR
HHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCC
APAGSEIKEDRNGRPVVLKKRIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFS
CCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCEEHHH
RKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQATIQSALGRSFRITGIDSQAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCHH
HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRN
HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHHHHHHHHHHHH
RCVINLVYGGKRVDKLSI
HHHEEEHCCCCCCCCCCC
>Mature Secondary Structure
MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCC
NIAYKSIAFENGSVLVRFKDTDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKP
CEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEHHHCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLREAKIRYRAIRSSGKESVEVVL
EEECCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHH
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGR
HHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCC
APAGSEIKEDRNGRPVVLKKRIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFS
CCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCEEHHH
RKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQATIQSALGRSFRITGIDSQAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCHH
HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRN
HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHHHHHHHHHHHH
RCVINLVYGGKRVDKLSI
HHHEEEHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]