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The map label for this gene is secF [H]

Identifier: 209695856

GI number: 209695856

Start: 2603684

End: 2604634

Strand: Reverse

Name: secF [H]

Synonym: VSAL_I2432

Alternate gene names: 209695856

Gene position: 2604634-2603684 (Counterclockwise)

Preceding gene: 209695857

Following gene: 209695851

Centisome position: 78.33

GC content: 41.75

Gene sequence:

>951_bases
ATGTTTCAAATAATGAAAGCAGAGAAAACGATCGACTTTATGCGTTGGTCTAAGCCTGCCTTTTTCTTCTCCATGCTGAT
GATTGTAGCGTCAATTGCTACGCTATCAACAAAGTGGTTGAATTGGGGGCTAGATTTTACGGGCGGAACGTTAATTGAAG
TCGGTTTTGAACAGCCAGCTCAGTTAGAAGATATTCGTGGCGCGCTACAAGCAAAAGGCTTTGGTGATGCGACGGTACAA
AACTTTGGTACAGCACGTGATGTAATTGTTCGTCTTCAACCTCGAGAAGGCATGAAAGGAGAGCAATTAGGTAATCAAAT
CATTAGTGCGATTAAAGAAGGTACGGGCGATCAAGTTGAGATGCGTCGTATTGAGTTTGTCGGCCCAAATGTAGGGGGAG
AATTAGCGGAGTCGGGTGGTTTAGCTATCCTTGTGTCTTTGTTATGCATCTTGGCTTATGTGTCGATTCGTTTCCAGTGG
CGTTTAGCTGCGGGTGCTGTATTAGCATTGGCCCACGATATAATTATCACGCTAGGTATTTTCTCATTCTTACAAATTGA
AGTCGATTTAACGATTATCGCGGCACTATTAACCGTTGTGGGGTATTCCTTGAATGATACCATTGTTGTATTTGATCGGA
TCCGTGAAAACTTCTTAAAAATGCGTAAAGGTGCTCCTGAAGAAATAATGAATGATTCCATTACTCAAACGTTAAGCCGT
ACGTTGATTACATCAGCAACGACTTTGTTTGTGGTTATCGCATTGTTTGTTCAAGGCGGAGCAATGATCCATGGTTTTGC
TCTGGCATTACTATTAGGTATTACGGTTGGTACGTATTCTTCTATCTACGTAGCTTCTGCATTGGCTCTCAAATTAGGTA
TTACACGCGAACATCTAATGCCAACACCTATCGATAAAGAAGGTGAGGAAGAATTTGAAGAAATGCCTTAA

Upstream 100 bases:

>100_bases
ACTTCAATGTTTACGGCTATCGTCGGTACTCGTTGTGTTATTAACTTAGTTTACGGCGGTAAGCGCGTAGACAAACTGTC
GATCTAAGGGAATATTTGTC

Downstream 100 bases:

>100_bases
TCGGTAATTTTAATATTCTGCTCATAAAAAATGGACCGTAATTGGTCCATTTTTTTATTTGTATAAATGAATTTTACAGT
TTATCGAGATCTCTTTCTAT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLEDIRGALQAKGFGDATVQ
NFGTARDVIVRLQPREGMKGEQLGNQIISAIKEGTGDQVEMRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAPEEIMNDSITQTLSR
TLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEEMP

Sequences:

>Translated_316_residues
MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLEDIRGALQAKGFGDATVQ
NFGTARDVIVRLQPREGMKGEQLGNQIISAIKEGTGDQVEMRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAPEEIMNDSITQTLSR
TLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEEMP
>Mature_316_residues
MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLEDIRGALQAKGFGDATVQ
NFGTARDVIVRLQPREGMKGEQLGNQIISAIKEGTGDQVEMRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAPEEIMNDSITQTLSR
TLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEEMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=315, Percent_Identity=53.968253968254, Blast_Score=361, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34584; Mature: 34584

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
QLEDIRGALQAKGFGDATVQNFGTARDVIVRLQPREGMKGEQLGNQIISAIKEGTGDQVE
HHHHHHHHHHCCCCCCHHHHHCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCH
MRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQWRLAAGAVLALAHDIIITLGI
HHEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHH
FSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAPEEIMNDSITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHLM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PTPIDKEGEEEFEEMP
CCCCCCCCHHHHHCCC
>Mature Secondary Structure
MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
QLEDIRGALQAKGFGDATVQNFGTARDVIVRLQPREGMKGEQLGNQIISAIKEGTGDQVE
HHHHHHHHHHCCCCCCHHHHHCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCH
MRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQWRLAAGAVLALAHDIIITLGI
HHEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHH
FSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAPEEIMNDSITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREHLM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PTPIDKEGEEEFEEMP
CCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]