| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is cat3 [H]
Identifier: 209695520
GI number: 209695520
Start: 2225514
End: 2226170
Strand: Direct
Name: cat3 [H]
Synonym: VSAL_I2074
Alternate gene names: 209695520
Gene position: 2225514-2226170 (Clockwise)
Preceding gene: 209695517
Following gene: 209695521
Centisome position: 66.93
GC content: 42.16
Gene sequence:
>657_bases ATGGCGTATAACGTGCTAGATGTCAACCAGTGGGCGCGAGCTCAGCACTTGAGATTTTATCAAGGCTTTAGTCACCCTTG GTATAATATCTGTTCCAATATCGACGTAACCGCGCTGTACCAATATTGTAAGCAGCACAATCATCGTTTCTTCCACGCTT ATCTTTATCTAACTCAGCAAGCGCTAAATCAATGTGAACCGATGAGCTATCGCCTTGTTGGGGAAGAAGTCCGCATTTAC TCACCTATGTGTATCAGTGTCGCACTGCTTGCCGATGATAATACGGTGCGTTTTTGTGATTTAGACCATGAGCCTACATT TTCTAACTTTACACTAAGTGCATCCAAAGCCGAGACACTGATTAAGAACACACCTTTTATCGTAGAGCAGTTCATTGGCC AAGAAATGAAGCAGAACACGATTCATTTAACCGTATTACCATGGGTAGATTTCACTAGTATGACTCATGCTAGAGACGTT AACTTTCCAGATAGCGTGCCGAAAATGGCATTTGGAAAACTGGTTCAACAAAATGAACAATGGCGTATGCCGCTATCCAT TGAAGTACATCATGGCTTAATGGATGGTTTACACGTGGGGCAATTTATACAGATATTACAAGCGATGTTTGATGACCCAT CACAGCTTGAACAATAG
Upstream 100 bases:
>100_bases TATTAGTAAGAACGACAAGATTCAAATGTATCTTGAAGTCGCTTAAATATATAAATAGAATCAAACCGTTCAAAATGATT GGACTTTATAGGGAATTCAA
Downstream 100 bases:
>100_bases AAATAGGCTTCATATTTATACTGAGACGAGCAATATTACGCTCGTCAACATGCCCTATAAAGGATATCTAACTCATTATC TCCAATTCTACTTACCCGTT
Product: chloramphenicol acetyltransferase
Products: NA
Alternate protein names: Chloramphenicol acetyltransferase III; CAT-III [H]
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MAYNVLDVNQWARAQHLRFYQGFSHPWYNICSNIDVTALYQYCKQHNHRFFHAYLYLTQQALNQCEPMSYRLVGEEVRIY SPMCISVALLADDNTVRFCDLDHEPTFSNFTLSASKAETLIKNTPFIVEQFIGQEMKQNTIHLTVLPWVDFTSMTHARDV NFPDSVPKMAFGKLVQQNEQWRMPLSIEVHHGLMDGLHVGQFIQILQAMFDDPSQLEQ
Sequences:
>Translated_218_residues MAYNVLDVNQWARAQHLRFYQGFSHPWYNICSNIDVTALYQYCKQHNHRFFHAYLYLTQQALNQCEPMSYRLVGEEVRIY SPMCISVALLADDNTVRFCDLDHEPTFSNFTLSASKAETLIKNTPFIVEQFIGQEMKQNTIHLTVLPWVDFTSMTHARDV NFPDSVPKMAFGKLVQQNEQWRMPLSIEVHHGLMDGLHVGQFIQILQAMFDDPSQLEQ >Mature_217_residues AYNVLDVNQWARAQHLRFYQGFSHPWYNICSNIDVTALYQYCKQHNHRFFHAYLYLTQQALNQCEPMSYRLVGEEVRIYS PMCISVALLADDNTVRFCDLDHEPTFSNFTLSASKAETLIKNTPFIVEQFIGQEMKQNTIHLTVLPWVDFTSMTHARDVN FPDSVPKMAFGKLVQQNEQWRMPLSIEVHHGLMDGLHVGQFIQILQAMFDDPSQLEQ
Specific function: This enzyme is an effector of chloramphenicol resistance in bacteria [H]
COG id: COG4845
COG function: function code V; Chloramphenicol O-acetyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chloramphenicol acetyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023213 - InterPro: IPR018372 - InterPro: IPR001707 - ProDom: PD002660 [H]
Pfam domain/function: PF00302 CAT [H]
EC number: =2.3.1.28 [H]
Molecular weight: Translated: 25438; Mature: 25307
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYNVLDVNQWARAQHLRFYQGFSHPWYNICSNIDVTALYQYCKQHNHRFFHAYLYLTQQ CCCEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCEEEHHHHHHHHH ALNQCEPMSYRLVGEEVRIYSPMCISVALLADDNTVRFCDLDHEPTFSNFTLSASKAETL HHHHCCCCEEEEECCHHEEECCCEEEEEEEECCCEEEEEECCCCCCCCCEEEEHHHHHHH IKNTPFIVEQFIGQEMKQNTIHLTVLPWVDFTSMTHARDVNFPDSVPKMAFGKLVQQNEQ HHCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC WRMPLSIEVHHGLMDGLHVGQFIQILQAMFDDPSQLEQ CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure AYNVLDVNQWARAQHLRFYQGFSHPWYNICSNIDVTALYQYCKQHNHRFFHAYLYLTQQ CCEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCEEEHHHHHHHHH ALNQCEPMSYRLVGEEVRIYSPMCISVALLADDNTVRFCDLDHEPTFSNFTLSASKAETL HHHHCCCCEEEEECCHHEEECCCEEEEEEEECCCEEEEEECCCCCCCCCEEEEHHHHHHH IKNTPFIVEQFIGQEMKQNTIHLTVLPWVDFTSMTHARDVNFPDSVPKMAFGKLVQQNEQ HHCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC WRMPLSIEVHHGLMDGLHVGQFIQILQAMFDDPSQLEQ CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3048245; 3288984; 2187098 [H]