Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695186
Identifier: 209695186
GI number: 209695186
Start: 1789542
End: 1789946
Strand: Direct
Name: 209695186
Synonym: VSAL_I1693
Alternate gene names: NA
Gene position: 1789542-1789946 (Clockwise)
Preceding gene: 209695184
Following gene: 209695191
Centisome position: 53.82
GC content: 35.06
Gene sequence:
>405_bases ATGGATAAGCAGGTAAATATTATGAACGTAACGATGGCATTCACAACTCGCTCAAACTCATACGCACAACATATTGCACA GCGTATTTCTCACATAGCGCAAGAGACTAATGAACAATGCGAGCAGCACTTCATTCAATTACTTAAAAGTTTATCTAAAC AGAAGAAATGGATCTTTATTACAGCAAATACGATGATGCCAAGCTGTGATGTGTTATTACAAAATGGGGTTGAGCTAAAC AGACTCATCCGCTTAAAGGCTTCAAGTAATTTGACAGAGCAAGAAACAATCAATAAAGCTCAACAATTAGGCACCGCAAG TGCCATTATCTCAAACAATAATTGCTACTACTTTACAGATGAACAATGGTTAACATTAAATCGAAAATTAACAATTTTAC ATTAA
Upstream 100 bases:
>100_bases CTTTGGCTTAGCTCTACTTTACGAGTGTATAAATCGATTAAAAAATCAAAAATAGCTTGATCGTTAATCAAAATAAAAGT ACTGTATAAATACACACTGC
Downstream 100 bases:
>100_bases CCTTTATTCTTTTTCTTTAAGATGAATGATAAGAAGATCAATACCTTCGCCCTTCTGGGAAATAGTCGTGTGTGTATTTG CAAGGATATAATTGATCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MDKQVNIMNVTMAFTTRSNSYAQHIAQRISHIAQETNEQCEQHFIQLLKSLSKQKKWIFITANTMMPSCDVLLQNGVELN RLIRLKASSNLTEQETINKAQQLGTASAIISNNNCYYFTDEQWLTLNRKLTILH
Sequences:
>Translated_134_residues MDKQVNIMNVTMAFTTRSNSYAQHIAQRISHIAQETNEQCEQHFIQLLKSLSKQKKWIFITANTMMPSCDVLLQNGVELN RLIRLKASSNLTEQETINKAQQLGTASAIISNNNCYYFTDEQWLTLNRKLTILH >Mature_134_residues MDKQVNIMNVTMAFTTRSNSYAQHIAQRISHIAQETNEQCEQHFIQLLKSLSKQKKWIFITANTMMPSCDVLLQNGVELN RLIRLKASSNLTEQETINKAQQLGTASAIISNNNCYYFTDEQWLTLNRKLTILH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15461; Mature: 15461
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKQVNIMNVTMAFTTRSNSYAQHIAQRISHIAQETNEQCEQHFIQLLKSLSKQKKWIFI CCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE TANTMMPSCDVLLQNGVELNRLIRLKASSNLTEQETINKAQQLGTASAIISNNNCYYFTD EECCCCCHHHHHHHCCCCEEHEEEEECCCCCCHHHHHHHHHHCCCHHEEEECCCEEEEEC EQWLTLNRKLTILH CCEEEECCEEEEEC >Mature Secondary Structure MDKQVNIMNVTMAFTTRSNSYAQHIAQRISHIAQETNEQCEQHFIQLLKSLSKQKKWIFI CCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE TANTMMPSCDVLLQNGVELNRLIRLKASSNLTEQETINKAQQLGTASAIISNNNCYYFTD EECCCCCHHHHHHHCCCCEEHEEEEECCCCCCHHHHHHHHHHCCCHHEEEECCCEEEEEC EQWLTLNRKLTILH CCEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA