Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695184
Identifier: 209695184
GI number: 209695184
Start: 1786702
End: 1787466
Strand: Direct
Name: 209695184
Synonym: VSAL_I1690
Alternate gene names: NA
Gene position: 1786702-1787466 (Clockwise)
Preceding gene: 209695181
Following gene: 209695186
Centisome position: 53.73
GC content: 35.69
Gene sequence:
>765_bases ATGAATATTGCTCTTATTGTTGGACTGTTTGCAATTCTACTAACCTTGATTATTGGCTATAATGTGATTGTTCAGTACAG AACAAAAATTGAATCCGCTAAAAAACAAGAATCTGCAAAACACATGATGATTATTGATTCTACCGAAGAGTTAATCAGTA ATGCCCACCATTTACCTTACAGTAAAGAGTTATTAGTCTGCTTAAATCAACGAATTCTAGACGCTTTACGCTCAATTGCT GAATTATCACCCACTGATCGTTCATACCCTGCACGCATTGAAAACATGGAACAACAACTTCAACAGCTAAAAACAAATTA TACTGGCGGCGACAGCACGAATTTCAAAGTGCCAAGCAATGATAAACAAGCCATCGTTATGTTGAAGTTAGTTAAACGCT TACGAGATACGCTTCGTGCGGAACATAAAAAAGGCCGTGTAAATACCCAAGTCTTTGTTGCTGAAAACGCACGTCTTGAA TCAATTCAAGTTCGAATTAATATCGAAAACGTAGTAAAGCGAGCCAAAGAAGCAACTCAACGTGGCCAAGCAGGTACTGC TCGTCAATTACTTAAAAAAGGGATTGATGCCCTATCAAGTAAAAATGATGGTTATTCAAATAAAGCACGAACTCAACTGC AAGATATGCTTGATGAATTGAATAACAAAACAAAGAGAAAACAAGATAAAGAACTTCAAGACCAATTAGATAAAAATAAA GATGATGAGATTGATGTCTTATTTCAACCGAAAAAGAAATGGTAA
Upstream 100 bases:
>100_bases CCTTTGCGCTAATTTGTTATTTGGAGTTAGCCGCCTTCTATTCATTTAGTTTACAAGGTGTTACACTGGCAACTATTACT ACTGGATGTATGATTAAACT
Downstream 100 bases:
>100_bases TAACCACACGCTAATTGCCTAAGCATACATCAAATAAAAAAGGTCGCACAATGCGACCTTTTTTATTATCTGTTATTTAT TAATAACAATAAGATTATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MNIALIVGLFAILLTLIIGYNVIVQYRTKIESAKKQESAKHMMIIDSTEELISNAHHLPYSKELLVCLNQRILDALRSIA ELSPTDRSYPARIENMEQQLQQLKTNYTGGDSTNFKVPSNDKQAIVMLKLVKRLRDTLRAEHKKGRVNTQVFVAENARLE SIQVRINIENVVKRAKEATQRGQAGTARQLLKKGIDALSSKNDGYSNKARTQLQDMLDELNNKTKRKQDKELQDQLDKNK DDEIDVLFQPKKKW
Sequences:
>Translated_254_residues MNIALIVGLFAILLTLIIGYNVIVQYRTKIESAKKQESAKHMMIIDSTEELISNAHHLPYSKELLVCLNQRILDALRSIA ELSPTDRSYPARIENMEQQLQQLKTNYTGGDSTNFKVPSNDKQAIVMLKLVKRLRDTLRAEHKKGRVNTQVFVAENARLE SIQVRINIENVVKRAKEATQRGQAGTARQLLKKGIDALSSKNDGYSNKARTQLQDMLDELNNKTKRKQDKELQDQLDKNK DDEIDVLFQPKKKW >Mature_254_residues MNIALIVGLFAILLTLIIGYNVIVQYRTKIESAKKQESAKHMMIIDSTEELISNAHHLPYSKELLVCLNQRILDALRSIA ELSPTDRSYPARIENMEQQLQQLKTNYTGGDSTNFKVPSNDKQAIVMLKLVKRLRDTLRAEHKKGRVNTQVFVAENARLE SIQVRINIENVVKRAKEATQRGQAGTARQLLKKGIDALSSKNDGYSNKARTQLQDMLDELNNKTKRKQDKELQDQLDKNK DDEIDVLFQPKKKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29084; Mature: 29084
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIALIVGLFAILLTLIIGYNVIVQYRTKIESAKKQESAKHMMIIDSTEELISNAHHLPY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCC SKELLVCLNQRILDALRSIAELSPTDRSYPARIENMEQQLQQLKTNYTGGDSTNFKVPSN HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DKQAIVMLKLVKRLRDTLRAEHKKGRVNTQVFVAENARLESIQVRINIENVVKRAKEATQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHH RGQAGTARQLLKKGIDALSSKNDGYSNKARTQLQDMLDELNNKTKRKQDKELQDQLDKNK CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DDEIDVLFQPKKKW CCCEEEEECCCCCC >Mature Secondary Structure MNIALIVGLFAILLTLIIGYNVIVQYRTKIESAKKQESAKHMMIIDSTEELISNAHHLPY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCC SKELLVCLNQRILDALRSIAELSPTDRSYPARIENMEQQLQQLKTNYTGGDSTNFKVPSN HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DKQAIVMLKLVKRLRDTLRAEHKKGRVNTQVFVAENARLESIQVRINIENVVKRAKEATQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHH RGQAGTARQLLKKGIDALSSKNDGYSNKARTQLQDMLDELNNKTKRKQDKELQDQLDKNK CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DDEIDVLFQPKKKW CCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA