Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695033
Identifier: 209695033
GI number: 209695033
Start: 1630109
End: 1630489
Strand: Direct
Name: 209695033
Synonym: VSAL_I1528
Alternate gene names: NA
Gene position: 1630109-1630489 (Clockwise)
Preceding gene: 209695032
Following gene: 209695034
Centisome position: 49.02
GC content: 38.32
Gene sequence:
>381_bases ATGAAGATCAGTCATTTAGACCATCTGGTGTTAACGGTTAAAGACATTACAGCAACCGTTGAGTTTTATTCTAAAATATT AGGCATGGAAGCGGTGTATTTTGCAAAAGACAGAGTCGCTCTATCTTTTGGTCATCAGAAAATCAATTTACACCAGTCAG GTAACGAATTTGAACCAAAAGCACAGTATGTGCAGAGTGGAAGTGCTGATTTATGTTTCATTACGGACACCCCTATCATT GAGGTAAAAGCGCACATAGAACAACAAGGTGTTACTGTTTTTGAGGGACCAATACAGCGAACAGGGGCGATAGGCAATAT CATCTCTGTTTATTTTAGAGATCTTGATGGTAACCTGATTGAAGTCTCCAATTATTTATAG
Upstream 100 bases:
>100_bases CTCACTAAAGACGCTTCATTAATTGAACTTGCTCATGAAATGTTTTTAGATATCATCGATTCTAAGTAAGTTACCTTACA TCATAATAGGGGCGGGTAGA
Downstream 100 bases:
>100_bases TCTTCACTTCCAATAGCGTTATAACGATTAATACCGTCAATTCCTATTTATATGCAAACTGATTTTCAGCATGGTGAATT TAAAATAGTTGACTTAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MKISHLDHLVLTVKDITATVEFYSKILGMEAVYFAKDRVALSFGHQKINLHQSGNEFEPKAQYVQSGSADLCFITDTPII EVKAHIEQQGVTVFEGPIQRTGAIGNIISVYFRDLDGNLIEVSNYL
Sequences:
>Translated_126_residues MKISHLDHLVLTVKDITATVEFYSKILGMEAVYFAKDRVALSFGHQKINLHQSGNEFEPKAQYVQSGSADLCFITDTPII EVKAHIEQQGVTVFEGPIQRTGAIGNIISVYFRDLDGNLIEVSNYL >Mature_126_residues MKISHLDHLVLTVKDITATVEFYSKILGMEAVYFAKDRVALSFGHQKINLHQSGNEFEPKAQYVQSGSADLCFITDTPII EVKAHIEQQGVTVFEGPIQRTGAIGNIISVYFRDLDGNLIEVSNYL
Specific function: Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidogly
COG id: COG0346
COG function: function code E; Lactoylglutathione lyase and related lyases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI254039722, Length=124, Percent_Identity=57.258064516129, Blast_Score=151, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: NA
Molecular weight: Translated: 14058; Mature: 14058
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISHLDHLVLTVKDITATVEFYSKILGMEAVYFAKDRVALSFGHQKINLHQSGNEFEPK CCCCCHHEEEEEHHHHHHHHHHHHHHHCCHHEEEECCEEEEEECCEEEEEECCCCCCCCH AQYVQSGSADLCFITDTPIIEVKAHIEQQGVTVFEGPIQRTGAIGNIISVYFRDLDGNLI HHHHHCCCCCEEEEECCCEEEEEEEHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEE EVSNYL EEECCC >Mature Secondary Structure MKISHLDHLVLTVKDITATVEFYSKILGMEAVYFAKDRVALSFGHQKINLHQSGNEFEPK CCCCCHHEEEEEHHHHHHHHHHHHHHHCCHHEEEECCEEEEEECCEEEEEECCCCCCCCH AQYVQSGSADLCFITDTPIIEVKAHIEQQGVTVFEGPIQRTGAIGNIISVYFRDLDGNLI HHHHHCCCCCEEEEECCCEEEEEEEHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEE EVSNYL EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]