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The map label for this gene is yjdC [C]

Identifier: 209695032

GI number: 209695032

Start: 1629520

End: 1630077

Strand: Direct

Name: yjdC [C]

Synonym: VSAL_I1527

Alternate gene names: 209695032

Gene position: 1629520-1630077 (Clockwise)

Preceding gene: 209695030

Following gene: 209695033

Centisome position: 49.01

GC content: 37.28

Gene sequence:

>558_bases
ATGAAAGAAGATAAGAGAGTTAATGCACTGCAAAAAACGATAGAGCTGTGTGCGTTACATGGTTTTCACGGTACAAGCAT
GGATAAAATAACGGCCGCGACTGGTTTATCCAAGGCGACCATCTATAAATATTTTCAATCAAAAGAGAATTTAATCGCTA
AAGCGTTGGAATTGTTTAGCGAGCAATCACTCTCGAACGTGAAGGCGCTTTTTGAGAATTCAGAACTTACTTTAAAGCAA
AAAATATCTTTGCGCTTTGAGGGACTCTCTGGTTGTATTGATATCCCATCATTTAATGGCTGCTATTTTCAATTAGCTTA
CAGTGAGTATAGCCATGAAGATAAAGCGATAACGGAAGTGAGCGCTAAATATAAGCAGAGAACTCAAGAGTTACTCATTG
AGCTTCTTAAGCGTCATCATATTGAAGATGCAGAGCTAAAAGCGAGAAAGACAGGGATAGTATATAACGGATTGTTAGCG
TCGTTACAACTCACTAAAGACGCTTCATTAATTGAACTTGCTCATGAAATGTTTTTAGATATCATCGATTCTAAGTAA

Upstream 100 bases:

>100_bases
CGGTTTAGTTTAATTTATCGTTTATTTTAGTTAAGTCAACTGGTTTTTGAACTAAACCGTTTATTTTGTTATTATCGAAC
TAAAGAAGGAGAATGTTGTC

Downstream 100 bases:

>100_bases
GTTACCTTACATCATAATAGGGGCGGGTAGAATGAAGATCAGTCATTTAGACCATCTGGTGTTAACGGTTAAAGACATTA
CAGCAACCGTTGAGTTTTAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; TetR Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Of TetR Family Protein; Regulatory Protein TetR; HTH-Type Transcriptional Regulator TetR Family

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKEDKRVNALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIAKALELFSEQSLSNVKALFENSELTLKQ
KISLRFEGLSGCIDIPSFNGCYFQLAYSEYSHEDKAITEVSAKYKQRTQELLIELLKRHHIEDAELKARKTGIVYNGLLA
SLQLTKDASLIELAHEMFLDIIDSK

Sequences:

>Translated_185_residues
MKEDKRVNALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIAKALELFSEQSLSNVKALFENSELTLKQ
KISLRFEGLSGCIDIPSFNGCYFQLAYSEYSHEDKAITEVSAKYKQRTQELLIELLKRHHIEDAELKARKTGIVYNGLLA
SLQLTKDASLIELAHEMFLDIIDSK
>Mature_185_residues
MKEDKRVNALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIAKALELFSEQSLSNVKALFENSELTLKQ
KISLRFEGLSGCIDIPSFNGCYFQLAYSEYSHEDKAITEVSAKYKQRTQELLIELLKRHHIEDAELKARKTGIVYNGLLA
SLQLTKDASLIELAHEMFLDIIDSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082374, Length=178, Percent_Identity=21.9101123595506, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20923; Mature: 20923

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDKRVNALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIAKALELFS
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EQSLSNVKALFENSELTLKQKISLRFEGLSGCIDIPSFNGCYFQLAYSEYSHEDKAITEV
HHHHHHHHHHHCCCCCHHHHHHHHEECCCCCEEECCCCCCEEEEEEHHHHCCCHHHHHHH
SAKYKQRTQELLIELLKRHHIEDAELKARKTGIVYNGLLASLQLTKDASLIELAHEMFLD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IIDSK
HHCCC
>Mature Secondary Structure
MKEDKRVNALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIAKALELFS
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EQSLSNVKALFENSELTLKQKISLRFEGLSGCIDIPSFNGCYFQLAYSEYSHEDKAITEV
HHHHHHHHHHHCCCCCHHHHHHHHEECCCCCEEECCCCCCEEEEEEHHHHCCCHHHHHHH
SAKYKQRTQELLIELLKRHHIEDAELKARKTGIVYNGLLASLQLTKDASLIELAHEMFLD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IIDSK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA