Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695018
Identifier: 209695018
GI number: 209695018
Start: 1613721
End: 1614158
Strand: Direct
Name: 209695018
Synonym: VSAL_I1510
Alternate gene names: NA
Gene position: 1613721-1614158 (Clockwise)
Preceding gene: 209695017
Following gene: 209695019
Centisome position: 48.53
GC content: 42.69
Gene sequence:
>438_bases ATGCTCAATGAAAACTTATCTGGCTTAGAATTAATGCAAGCAATGGTGACGGGGGATTTTCCTCATCCATCGATGGCTGA CGTAGTTCCGATGAAAATCATTTCAGCAGAATATGGCAAAGTGGTCTTTGAAGCGATGGCGGATGATCGGCACTTGAATC CATTGGGTGGGGTTCATGGTGGCTTCTTTGCCACCGTAATGGATTTGGTCACTGGGTGTTCGGTGCATACAACGCTCGAA CCTAATATTGGTTATGGAACGATTGATCTTCATGTGAAAATGTTAAAAGCGATACCGAGAAATACGTTATTGATTGCGGA AAGTCGGGTGATACAGTCAGGTTATTCATTGGGAATATCAGAAGGCAGCTTGAAAGATAAGTTGGGTAATTTATATGCGC ATGCAACCGCGACTTGTATGATTTATCGAGGAAAATGA
Upstream 100 bases:
>100_bases TCAAGCTCACATTGTGACTAAGGAATAATGGCTTTCCCTTATTTAAGGGGTATTTTTATTAATGTAAATAAGACGATTAA TAAAATACTAAGGACATGTG
Downstream 100 bases:
>100_bases CGGTATTTAATGATAGCCTATTGTTAGTATCAATGATTTTTATTGTTTTAAAGAGGGAGTGAGATGACGTATCCAATTGT AGGCTCTTGTCAATGTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Thioesterase Family Protein; Thioesterase; Aromatic Compounds Catabolic Protein; PaaI Thioesterase; Aromatic Compounds Degradation Protein PaaI; Domain 1 Protein; Protein Involved In Aromatic Compounds Catabolism; Orf_Bo
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MLNENLSGLELMQAMVTGDFPHPSMADVVPMKIISAEYGKVVFEAMADDRHLNPLGGVHGGFFATVMDLVTGCSVHTTLE PNIGYGTIDLHVKMLKAIPRNTLLIAESRVIQSGYSLGISEGSLKDKLGNLYAHATATCMIYRGK
Sequences:
>Translated_145_residues MLNENLSGLELMQAMVTGDFPHPSMADVVPMKIISAEYGKVVFEAMADDRHLNPLGGVHGGFFATVMDLVTGCSVHTTLE PNIGYGTIDLHVKMLKAIPRNTLLIAESRVIQSGYSLGISEGSLKDKLGNLYAHATATCMIYRGK >Mature_145_residues MLNENLSGLELMQAMVTGDFPHPSMADVVPMKIISAEYGKVVFEAMADDRHLNPLGGVHGGFFATVMDLVTGCSVHTTLE PNIGYGTIDLHVKMLKAIPRNTLLIAESRVIQSGYSLGISEGSLKDKLGNLYAHATATCMIYRGK
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15638; Mature: 15638
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNENLSGLELMQAMVTGDFPHPSMADVVPMKIISAEYGKVVFEAMADDRHLNPLGGVHG CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH GFFATVMDLVTGCSVHTTLEPNIGYGTIDLHVKMLKAIPRNTLLIAESRVIQSGYSLGIS HHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCC EGSLKDKLGNLYAHATATCMIYRGK CCHHHHHHHHHHEEEEEEEEEEECC >Mature Secondary Structure MLNENLSGLELMQAMVTGDFPHPSMADVVPMKIISAEYGKVVFEAMADDRHLNPLGGVHG CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH GFFATVMDLVTGCSVHTTLEPNIGYGTIDLHVKMLKAIPRNTLLIAESRVIQSGYSLGIS HHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCC EGSLKDKLGNLYAHATATCMIYRGK CCHHHHHHHHHHEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA