Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695019
Identifier: 209695019
GI number: 209695019
Start: 1614222
End: 1614635
Strand: Direct
Name: 209695019
Synonym: VSAL_I1511
Alternate gene names: NA
Gene position: 1614222-1614635 (Clockwise)
Preceding gene: 209695018
Following gene: 209695020
Centisome position: 48.55
GC content: 37.68
Gene sequence:
>414_bases ATGACGTATCCAATTGTAGGCTCTTGTCAATGTGGGCAAGTAACTTATAAATTATGTGCAGCACCAAAAATGGTGATTGC TTGTCATTGTAAGGAATGCCAAAAATTATCGACAGCGCCATTCAGTGTTACCGCTATTATCGCAACTGAGGCGATTCAAT TTGATGGTGAGTTAACTGAGTGGAGTCGATTAGCTGATAGTGGAAATCAAAATAGCGCGAAGTTTTGTTCAACGTGTGGA AATCGAGTCTATCAATATAATCCTGATGATTTAACAACCATAAAGCTGAAATTAAAACCTGTTGATGTGAAAGATGATCG TATTTTTGAGCCGAGTATGCATATTTGGGTTTCTGAAAAATTGAGTTGGGTCCAAATTCCTAAGGGAATGGTGACGTTTG ATAAACAACGTTAA
Upstream 100 bases:
>100_bases TGCAACCGCGACTTGTATGATTTATCGAGGAAAATGACGGTATTTAATGATAGCCTATTGTTAGTATCAATGATTTTTAT TGTTTTAAAGAGGGAGTGAG
Downstream 100 bases:
>100_bases TGATAAAGATTAGGAGCTCATGTGTTATTTAAGTTGATTTTTCTGTTTGCCGCATTAACGCTACATGGTGTAAAGAGATC CCCTTATCCGCCGACATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Family; Glutathione-Dependent Formaldehyde-Activating Protein; Glutathione-Dependent Formaldehyde-Activating; Lipoprotein
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTYPIVGSCQCGQVTYKLCAAPKMVIACHCKECQKLSTAPFSVTAIIATEAIQFDGELTEWSRLADSGNQNSAKFCSTCG NRVYQYNPDDLTTIKLKLKPVDVKDDRIFEPSMHIWVSEKLSWVQIPKGMVTFDKQR
Sequences:
>Translated_137_residues MTYPIVGSCQCGQVTYKLCAAPKMVIACHCKECQKLSTAPFSVTAIIATEAIQFDGELTEWSRLADSGNQNSAKFCSTCG NRVYQYNPDDLTTIKLKLKPVDVKDDRIFEPSMHIWVSEKLSWVQIPKGMVTFDKQR >Mature_136_residues TYPIVGSCQCGQVTYKLCAAPKMVIACHCKECQKLSTAPFSVTAIIATEAIQFDGELTEWSRLADSGNQNSAKFCSTCGN RVYQYNPDDLTTIKLKLKPVDVKDDRIFEPSMHIWVSEKLSWVQIPKGMVTFDKQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15388; Mature: 15257
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 8.8 %Cys+Met (Translated Protein) 5.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYPIVGSCQCGQVTYKLCAAPKMVIACHCKECQKLSTAPFSVTAIIATEAIQFDGELTE CCCCCCCCCCCCHHHHHHHCCCCEEEEEECHHHHHCCCCCCEEEEEEEEEEEECCCCHHH WSRLADSGNQNSAKFCSTCGNRVYQYNPDDLTTIKLKLKPVDVKDDRIFEPSMHIWVSEK HHHHHCCCCCCCHHHHHHHCCCCEEECCCCEEEEEEEEEECCCCCCEEECCCEEEEEECC LSWVQIPKGMVTFDKQR CEEEECCCCCEEECCCC >Mature Secondary Structure TYPIVGSCQCGQVTYKLCAAPKMVIACHCKECQKLSTAPFSVTAIIATEAIQFDGELTE CCCCCCCCCCCHHHHHHHCCCCEEEEEECHHHHHCCCCCCEEEEEEEEEEEECCCCHHH WSRLADSGNQNSAKFCSTCGNRVYQYNPDDLTTIKLKLKPVDVKDDRIFEPSMHIWVSEK HHHHHCCCCCCCHHHHHHHCCCCEEECCCCEEEEEEEEEECCCCCCEEECCCEEEEEECC LSWVQIPKGMVTFDKQR CEEEECCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA