Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695017

Identifier: 209695017

GI number: 209695017

Start: 1612856

End: 1613518

Strand: Direct

Name: 209695017

Synonym: VSAL_I1509

Alternate gene names: NA

Gene position: 1612856-1613518 (Clockwise)

Preceding gene: 209695015

Following gene: 209695018

Centisome position: 48.5

GC content: 37.86

Gene sequence:

>663_bases
ATGGATAGCTTTTTTAGTAGTGAGATTATTCTTTCTAATTCGACCTTCTTTTTCTTTATGACTCTGTTATTGACAGGGTT
TCTTCATATACCGCTGTGGTGCGGTAAAAATTTATCAAAAATACAATGGAAGAAAGTCGATTACCTTTGGCCTTTAGTCG
CAGGAATTGGTTTGATGGGGACGGTATCAGAGGTGAGATCAAGAGTCGCTAGTGATTGGGCTGAGACTGAACATACCCGT
GCTGTTTTAAGTCTTGAATCTATTAATGACTATACAGTCAATCAACTAAAGAGCTTTCTTTGTGCGAGTGAACCAAGGGT
CAATAGAGGTGTTGAATCACAACAATCTTGTTCATGGTTTTTAAATTCAGCAAATTACTTACAGTCGGTAAACTTTAACG
AACTTCCTAATCTTACGTTTGATAGTTTACCTGAAATTACGTTTCGCTCAGAGCTGATAGAGTCAGATGTCATGTGGTTG
CAGGGGATGTTTGATAATTACCAGAGTCAGAAGTACGCGTATGAAAGTACAGTACTCGAGACGAAGAAGCACCCACTAGA
GGAACTCTTTTGGTATTTAAGTCCTTACTTAATTTGTATTGCGATTTCTGTACGTGTTACAAAAGTATCAGCAGAATTAA
AAATGGAGAGACAAGAAGGATGA

Upstream 100 bases:

>100_bases
GATTTTCATAATGGTATAAACGATAATCTGAATTATTTTAGTTACAGCAAGTCTATTGTTGGTGTTATTTTTAAAGAATC
ATGCATATAAATAGGTAGTT

Downstream 100 bases:

>100_bases
GGTCGAAAGCTTCCGATTGGGGGCGAGTATCAATCAATGTTGAACGTTATTATAAGATTATTCACTAGCGATTAGCGAGA
TGCCTGGTCTGTCCAGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR
AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL
QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG

Sequences:

>Translated_220_residues
MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR
AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL
QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG
>Mature_220_residues
MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR
AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL
QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25408; Mature: 25408

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TVSEVRSRVASDWAETEHTRAVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWLQGMFDNYQSQKYAYESTVLE
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG
HHCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCC
>Mature Secondary Structure
MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TVSEVRSRVASDWAETEHTRAVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWLQGMFDNYQSQKYAYESTVLE
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG
HHCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA