Click here to switch to the map view.

The map label for this gene is hycF [C]

Identifier: 209694967

GI number: 209694967

Start: 1567750

End: 1569426

Strand: Direct

Name: hycF [C]

Synonym: VSAL_I1450

Alternate gene names: 209694967

Gene position: 1567750-1569426 (Clockwise)

Preceding gene: 209694966

Following gene: 209694968

Centisome position: 47.15

GC content: 43.17

Gene sequence:

>1677_bases
ATGTTAACTCAATTTTTAGCACAATCTGAAACAACAAATGCCAAAGCTCGTCAGTTTGCTATTGCGCAAACTGTGGAACT
GAACAACTTGATCCCACCGACAGTAAGTTACGAAAGTCGTGGCAATCTTGTCATCATTGGTCCAACTCGAATTATTGTTG
ATGTGGCTGAGCAATTCACAGACTTAAACAGCATTACGTTGGTGTCTACAGAATCAGAAAACCAAGCGCACGAGTCAGAT
CGCACGGTGTATTTTGCAAAAGACTTATCAGTAAAAGGCTTTTTAGGCGCGTTTGATATTGAATGTGTCGTGAATGGCGA
AAAAGTAAATCTAGCGAAAGTCACCATCGGTGCAATGGCCTTTGACTTGGTGTTAGACATGAAGCTAGACAGTGTTATGT
CTGAGCAAGTGCCGGTTCCTGGCTATTATCCAGTAGGGCGCGGCTACCCAACATTGGCACAAGTGCTAGACGAACTGCCT
GGTTTAGTGGGTACGTTTGATAAACCAAAATATTTCCGTTTAAACCCTGATTTATGTGCCCACAGTTCTCGTGGTGTAAA
AGGGTGTGAGCGTTGTGTAGACGCTTGTCCCGCTGGCGCATTAACCAGTGAAGGCACCGCAGAAACGGGTCATAACATTC
AAATTAACCCATACCTTTGTCAAGGTGTTGGTACGTGTTCAACAGCATGCCCAACTGAAGCTATTAGCTATGCGTTACCA
GAAGCTGAAAAAACACAAAATTTCGCGGCTCGCTTATTAGCTAATTACAAAAAAGAAGGCGGAGAGACACCTATCATCGC
TTTCTGTAGTGATCGCCATGAAAACTTCAATGTAATGGCATTAAAAACAATGCCAGATCACATTATCCCCGTTGTGCTTG
ATGAAATTTTATCTGTCGGTATTGATACGTGGTTCTCAGCGTTAGTGAATGGTGCCGCTCAAGTGCTGTTTATCGCAAGC
CGTAGAATGCCAGAAACGATCCAACGAGTGCTAACGCAAGAAGTTGAAATTGCACAAGCATTCTTAACGCAACTTGGTCT
TGAACCAGAACGTGTGCAAGTGGTGTACATGGAAGCGTTAAATGAAATGGTCTTAATTGACACGCCATTATCTGTTATTG
ATGGGCAGTTAACGGGCAACAAACGTGAACGCTTGATGGGGGCATTGGATCATTTAGCCTTAAACGCCGCAGCGAATGAT
ATTGAAGTCATCGATGTTCAAGCGATGCCATTCCACGCGCCTTATGGAACCATCGATTGTGTAACCAAAGATTGTACGTT
ATGCATGGGTTGTGTGGCGGTTTGTCCAACACGCGCATTGCATGGTGATCAAGACAGCCCAACCTTAAAATTCATTGAGC
AAGATTGTGTTCAATGTGGTTTGTGTGTGAATGCGTGCCCAGAAAAAGCATTAAGCATGAAAGTGCAAATGAACTGGAAC
AAAGAAGAACGCCAAGAAACACAAATCATGCACAAAGAAGATGCCGCTTGTTGCCTAACATGTAATAAGCCATTCGCGCC
AGCATCCATGATTGAAATGCTAAGAGTTAAGTTACAAGGTAACCCACACTTTAGCGATGAAGCTTCAATCAACCGTCTAT
ACATGTGCGAAGACTGTCGAGTAAAAGACATCTTTATCGACTTATCAGCAAATCCAGAAAAACAATTAAAGGTCTAA

Upstream 100 bases:

>100_bases
TTAATTACCCATTAAGTTGGTACGGTTATTGCGATGTAACACCTAATGAATCCAGTCATAGAACTGAGTAGGCCCAACGG
GCTCAAGAATAGGTGAAGCA

Downstream 100 bases:

>100_bases
TACCATGAATGAACAACACCAGATCCGACAAGAAATTTATGGCTTATTAGCGCATTTATTCCGTTCAGCACCAGAGCAAG
CATTGGTTGATTGGTTAGTC

Product: ferredoxin

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Methyl-Viologen-Reducing Hydrogenase Delta Subunit; Polyferredoxins

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MLTQFLAQSETTNAKARQFAIAQTVELNNLIPPTVSYESRGNLVIIGPTRIIVDVAEQFTDLNSITLVSTESENQAHESD
RTVYFAKDLSVKGFLGAFDIECVVNGEKVNLAKVTIGAMAFDLVLDMKLDSVMSEQVPVPGYYPVGRGYPTLAQVLDELP
GLVGTFDKPKYFRLNPDLCAHSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALP
EAEKTQNFAARLLANYKKEGGETPIIAFCSDRHENFNVMALKTMPDHIIPVVLDEILSVGIDTWFSALVNGAAQVLFIAS
RRMPETIQRVLTQEVEIAQAFLTQLGLEPERVQVVYMEALNEMVLIDTPLSVIDGQLTGNKRERLMGALDHLALNAAAND
IEVIDVQAMPFHAPYGTIDCVTKDCTLCMGCVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMNWN
KEERQETQIMHKEDAACCLTCNKPFAPASMIEMLRVKLQGNPHFSDEASINRLYMCEDCRVKDIFIDLSANPEKQLKV

Sequences:

>Translated_558_residues
MLTQFLAQSETTNAKARQFAIAQTVELNNLIPPTVSYESRGNLVIIGPTRIIVDVAEQFTDLNSITLVSTESENQAHESD
RTVYFAKDLSVKGFLGAFDIECVVNGEKVNLAKVTIGAMAFDLVLDMKLDSVMSEQVPVPGYYPVGRGYPTLAQVLDELP
GLVGTFDKPKYFRLNPDLCAHSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALP
EAEKTQNFAARLLANYKKEGGETPIIAFCSDRHENFNVMALKTMPDHIIPVVLDEILSVGIDTWFSALVNGAAQVLFIAS
RRMPETIQRVLTQEVEIAQAFLTQLGLEPERVQVVYMEALNEMVLIDTPLSVIDGQLTGNKRERLMGALDHLALNAAAND
IEVIDVQAMPFHAPYGTIDCVTKDCTLCMGCVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMNWN
KEERQETQIMHKEDAACCLTCNKPFAPASMIEMLRVKLQGNPHFSDEASINRLYMCEDCRVKDIFIDLSANPEKQLKV
>Mature_558_residues
MLTQFLAQSETTNAKARQFAIAQTVELNNLIPPTVSYESRGNLVIIGPTRIIVDVAEQFTDLNSITLVSTESENQAHESD
RTVYFAKDLSVKGFLGAFDIECVVNGEKVNLAKVTIGAMAFDLVLDMKLDSVMSEQVPVPGYYPVGRGYPTLAQVLDELP
GLVGTFDKPKYFRLNPDLCAHSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALP
EAEKTQNFAARLLANYKKEGGETPIIAFCSDRHENFNVMALKTMPDHIIPVVLDEILSVGIDTWFSALVNGAAQVLFIAS
RRMPETIQRVLTQEVEIAQAFLTQLGLEPERVQVVYMEALNEMVLIDTPLSVIDGQLTGNKRERLMGALDHLALNAAAND
IEVIDVQAMPFHAPYGTIDCVTKDCTLCMGCVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMNWN
KEERQETQIMHKEDAACCLTCNKPFAPASMIEMLRVKLQGNPHFSDEASINRLYMCEDCRVKDIFIDLSANPEKQLKV

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61233; Mature: 61233

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTQFLAQSETTNAKARQFAIAQTVELNNLIPPTVSYESRGNLVIIGPTRIIVDVAEQFT
CCCHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHC
DLNSITLVSTESENQAHESDRTVYFAKDLSVKGFLGAFDIECVVNGEKVNLAKVTIGAMA
CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEECEEEEEEEEECCEEEEEEEEHHHHH
FDLVLDMKLDSVMSEQVPVPGYYPVGRGYPTLAQVLDELPGLVGTFDKPKYFRLNPDLCA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCEEEECCHHHC
HSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHCCC
EAEKTQNFAARLLANYKKEGGETPIIAFCSDRHENFNVMALKTMPDHIIPVVLDEILSVG
CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
IDTWFSALVNGAAQVLFIASRRMPETIQRVLTQEVEIAQAFLTQLGLEPERVQVVYMEAL
HHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHH
NEMVLIDTPLSVIDGQLTGNKRERLMGALDHLALNAAANDIEVIDVQAMPFHAPYGTIDC
CCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHH
VTKDCTLCMGCVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMNWN
HHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCC
KEERQETQIMHKEDAACCLTCNKPFAPASMIEMLRVKLQGNPHFSDEASINRLYMCEDCR
HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
VKDIFIDLSANPEKQLKV
EEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLTQFLAQSETTNAKARQFAIAQTVELNNLIPPTVSYESRGNLVIIGPTRIIVDVAEQFT
CCCHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHC
DLNSITLVSTESENQAHESDRTVYFAKDLSVKGFLGAFDIECVVNGEKVNLAKVTIGAMA
CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEECEEEEEEEEECCEEEEEEEEHHHHH
FDLVLDMKLDSVMSEQVPVPGYYPVGRGYPTLAQVLDELPGLVGTFDKPKYFRLNPDLCA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCEEEECCHHHC
HSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHCCC
EAEKTQNFAARLLANYKKEGGETPIIAFCSDRHENFNVMALKTMPDHIIPVVLDEILSVG
CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
IDTWFSALVNGAAQVLFIASRRMPETIQRVLTQEVEIAQAFLTQLGLEPERVQVVYMEAL
HHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHH
NEMVLIDTPLSVIDGQLTGNKRERLMGALDHLALNAAANDIEVIDVQAMPFHAPYGTIDC
CCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHH
VTKDCTLCMGCVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMNWN
HHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCC
KEERQETQIMHKEDAACCLTCNKPFAPASMIEMLRVKLQGNPHFSDEASINRLYMCEDCR
HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
VKDIFIDLSANPEKQLKV
EEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA