Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694966
Identifier: 209694966
GI number: 209694966
Start: 1566536
End: 1567543
Strand: Direct
Name: 209694966
Synonym: VSAL_I1449
Alternate gene names: NA
Gene position: 1566536-1567543 (Clockwise)
Preceding gene: 209694964
Following gene: 209694967
Centisome position: 47.11
GC content: 41.67
Gene sequence:
>1008_bases GTGGAACTAAAGACAGAAAGCGTTTGGCCACTGCAATTTGAAGTGATTGAAGAAATAAAGCAAGTAGGCCGTTGGAGTGC CCCTTCTTGGCATATTGGTGATGTACGCCTGTATGAAAAAGTGGCCGTCGCAACACAAAGTAACGGGATGTTATTTGAGC GTGAGCTAGAGATTTTTTTAGATGAAAGAACCGATTATCGTTTCAATCTAAGTTCTCAAAGTCCTAAGTTATTTTTTGCG TTTGAAAATGACAACGACGTACTTACGCCAGTAATGATCACCGCGTCACAAAGCATGATAGGGCAATACATGGATGGCGA TTATGTTGTGTTGTCTATCGATATGCCATTACCGATGCAAGCGTGGCTAGAAGCGTTCATTGGCAAGCATGGTGAACTTA TCGAAATTCGTAGAAAAAACGTAAAGGTGCGGGGCGCGCAAGTGAGCAACTTCCTAAGTAGATGGTCATTAAGAAAGAGA AAAGTTCAACAAGGTGAAGAGGTTAGCGATGAGCAATCGGTTGAGATTATTGCCGATACAAATCTTGTTGAGAATGATGA TGCGGTTGAGAACCGAGCAGAAAATGCGTCGTCTGAGTCTTTAATAGAAACGGCGGATAGCGCAGAAGAGCAAGTCTCTC TGCCAACAAAAGACGATCTTGTTAGTATTAATGGCACAAGCAATGTTAGCCAATTTATGGCAACGGGTGTGGATAAAGAT TTGAAAAAAGCCGCGTTGCGTAAGATGTTTTTGAATCCAGAATTTGCGATGGAAGATGAGCCAAATTATTCAACACCAGC CAAATTAAACTCTGATGTCGCAGCAACATTACGAGGATGGATGGTCGAACCGGTTGAAGAGGAAGAAGACGACATTGAGC CAGAGATCAGTGCCGAAACAGAACAAGATAATGATATTGAATCGAACGTCACTAACGAGAATGATAATGAATATCAATGC GTTATAGACAATAAAGAGCAAGACAGTGAGACAAAAAAGACCACTTAA
Upstream 100 bases:
>100_bases TATACCATAGAGATAAATCAAAAAGAAAGCGCTGTTGGTATAAGGATTGCTTTATATCATGTATAGCGATAAAAAAGCCT CATAAAAAGAAGGGTAACTT
Downstream 100 bases:
>100_bases TTAATCGGGACATTTTGAACCAAAGTGAGACAAAATGTCCCGACACACTTTTCATCCTTTCTAAATACCTTCAAAAATAC CTCTATTTCAGTTATTTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MELKTESVWPLQFEVIEEIKQVGRWSAPSWHIGDVRLYEKVAVATQSNGMLFERELEIFLDERTDYRFNLSSQSPKLFFA FENDNDVLTPVMITASQSMIGQYMDGDYVVLSIDMPLPMQAWLEAFIGKHGELIEIRRKNVKVRGAQVSNFLSRWSLRKR KVQQGEEVSDEQSVEIIADTNLVENDDAVENRAENASSESLIETADSAEEQVSLPTKDDLVSINGTSNVSQFMATGVDKD LKKAALRKMFLNPEFAMEDEPNYSTPAKLNSDVAATLRGWMVEPVEEEEDDIEPEISAETEQDNDIESNVTNENDNEYQC VIDNKEQDSETKKTT
Sequences:
>Translated_335_residues MELKTESVWPLQFEVIEEIKQVGRWSAPSWHIGDVRLYEKVAVATQSNGMLFERELEIFLDERTDYRFNLSSQSPKLFFA FENDNDVLTPVMITASQSMIGQYMDGDYVVLSIDMPLPMQAWLEAFIGKHGELIEIRRKNVKVRGAQVSNFLSRWSLRKR KVQQGEEVSDEQSVEIIADTNLVENDDAVENRAENASSESLIETADSAEEQVSLPTKDDLVSINGTSNVSQFMATGVDKD LKKAALRKMFLNPEFAMEDEPNYSTPAKLNSDVAATLRGWMVEPVEEEEDDIEPEISAETEQDNDIESNVTNENDNEYQC VIDNKEQDSETKKTT >Mature_335_residues MELKTESVWPLQFEVIEEIKQVGRWSAPSWHIGDVRLYEKVAVATQSNGMLFERELEIFLDERTDYRFNLSSQSPKLFFA FENDNDVLTPVMITASQSMIGQYMDGDYVVLSIDMPLPMQAWLEAFIGKHGELIEIRRKNVKVRGAQVSNFLSRWSLRKR KVQQGEEVSDEQSVEIIADTNLVENDDAVENRAENASSESLIETADSAEEQVSLPTKDDLVSINGTSNVSQFMATGVDKD LKKAALRKMFLNPEFAMEDEPNYSTPAKLNSDVAATLRGWMVEPVEEEEDDIEPEISAETEQDNDIESNVTNENDNEYQC VIDNKEQDSETKKTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38057; Mature: 38057
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKTESVWPLQFEVIEEIKQVGRWSAPSWHIGDVRLYEKVAVATQSNGMLFERELEIFL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHEEEEECCCCEEEEEEEEEEE DERTDYRFNLSSQSPKLFFAFENDNDVLTPVMITASQSMIGQYMDGDYVVLSIDMPLPMQ ECCCCEEEEECCCCCEEEEEEECCCCEECEEEEECCHHHHHHHCCCCEEEEEECCCCCHH AWLEAFIGKHGELIEIRRKNVKVRGAQVSNFLSRWSLRKRKVQQGEEVSDEQSVEIIADT HHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC NLVENDDAVENRAENASSESLIETADSAEEQVSLPTKDDLVSINGTSNVSQFMATGVDKD CCCCCCHHHHHHHCCCCHHHHHHHHHCHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCHH LKKAALRKMFLNPEFAMEDEPNYSTPAKLNSDVAATLRGWMVEPVEEEEDDIEPEISAET HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC EQDNDIESNVTNENDNEYQCVIDNKEQDSETKKTT CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHCCCC >Mature Secondary Structure MELKTESVWPLQFEVIEEIKQVGRWSAPSWHIGDVRLYEKVAVATQSNGMLFERELEIFL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHEEEEECCCCEEEEEEEEEEE DERTDYRFNLSSQSPKLFFAFENDNDVLTPVMITASQSMIGQYMDGDYVVLSIDMPLPMQ ECCCCEEEEECCCCCEEEEEEECCCCEECEEEEECCHHHHHHHCCCCEEEEEECCCCCHH AWLEAFIGKHGELIEIRRKNVKVRGAQVSNFLSRWSLRKRKVQQGEEVSDEQSVEIIADT HHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC NLVENDDAVENRAENASSESLIETADSAEEQVSLPTKDDLVSINGTSNVSQFMATGVDKD CCCCCCHHHHHHHCCCCHHHHHHHHHCHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCHH LKKAALRKMFLNPEFAMEDEPNYSTPAKLNSDVAATLRGWMVEPVEEEEDDIEPEISAET HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC EQDNDIESNVTNENDNEYQCVIDNKEQDSETKKTT CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA