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The map label for this gene is ygdD [C]

Identifier: 209694281

GI number: 209694281

Start: 777840

End: 778226

Strand: Direct

Name: ygdD [C]

Synonym: VSAL_I0692

Alternate gene names: 209694281

Gene position: 777840-778226 (Clockwise)

Preceding gene: 209694280

Following gene: 209694282

Centisome position: 23.39

GC content: 41.09

Gene sequence:

>387_bases
ATGAATAGTCGTCTATGCTTTCTTATTGCAGGCTTAAGTGGGGCATTAACCGTGGGTTTAGGCGCTTTTGGATCTCATGG
TTTAAAAGACGTATTATCACCGTATCTCCTTGATGTATATCAGACTGCGGTACAGTACCAAATGTGGCATACTCTGGCTT
TATTTGGTTGTGGAATTTTGTTGAGAAATTCCATGTCAAAAGGGGTATCATACGCCGCCTTGCTATTTACCATTGGCATA
ATTTTCTTCAGTGGTAGCTTATATGCATTAGTGTTCACAGGAATTAAGTGGTTTGGGCCAATAACTCCATTAGGTGGACT
CTGTTTTATTAGCGGTTGGCTGACGCTGGCTGTTTCAACTTATCGTTTGACTGAGGTTTCAAAGTGA

Upstream 100 bases:

>100_bases
TATCTGGTGTGTAATGAAAAGCAGGCCGATACGGGTCGTATTGCCACCTTTAGAGAGTGGGTGCTAAGCAAAGCACGCAG
TGAGCAAGATGTGGTGGATG

Downstream 100 bases:

>100_bases
AACAAGTAATGTTCTATTGTCGCTCTGGTTTTGAAAAAGAGTGTGCAGGTGAGATCCAAGATAAAGCCACTCAACTTGAA
GTGTTTGGTTTTCCTCGCCT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNSRLCFLIAGLSGALTVGLGAFGSHGLKDVLSPYLLDVYQTAVQYQMWHTLALFGCGILLRNSMSKGVSYAALLFTIGI
IFFSGSLYALVFTGIKWFGPITPLGGLCFISGWLTLAVSTYRLTEVSK

Sequences:

>Translated_128_residues
MNSRLCFLIAGLSGALTVGLGAFGSHGLKDVLSPYLLDVYQTAVQYQMWHTLALFGCGILLRNSMSKGVSYAALLFTIGI
IFFSGSLYALVFTGIKWFGPITPLGGLCFISGWLTLAVSTYRLTEVSK
>Mature_128_residues
MNSRLCFLIAGLSGALTVGLGAFGSHGLKDVLSPYLLDVYQTAVQYQMWHTLALFGCGILLRNSMSKGVSYAALLFTIGI
IFFSGSLYALVFTGIKWFGPITPLGGLCFISGWLTLAVSTYRLTEVSK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=125, Percent_Identity=33.6, Blast_Score=85, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193203406, Length=111, Percent_Identity=36.036036036036, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13798; Mature: 13798

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRLCFLIAGLSGALTVGLGAFGSHGLKDVLSPYLLDVYQTAVQYQMWHTLALFGCGIL
CCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNSMSKGVSYAALLFTIGIIFFSGSLYALVFTGIKWFGPITPLGGLCFISGWLTLAVST
HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
YRLTEVSK
HHHHCCCC
>Mature Secondary Structure
MNSRLCFLIAGLSGALTVGLGAFGSHGLKDVLSPYLLDVYQTAVQYQMWHTLALFGCGIL
CCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNSMSKGVSYAALLFTIGIIFFSGSLYALVFTGIKWFGPITPLGGLCFISGWLTLAVST
HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
YRLTEVSK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA