| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fusA [H]
Identifier: 209694218
GI number: 209694218
Start: 691624
End: 693708
Strand: Direct
Name: fusA [H]
Synonym: VSAL_I0627
Alternate gene names: 209694218
Gene position: 691624-693708 (Clockwise)
Preceding gene: 209694217
Following gene: 209694224
Centisome position: 20.8
GC content: 43.31
Gene sequence:
>2085_bases ATGACTGATTTATCTAAATACAGAAATATTGGTATTTTCGCGCACGTTGATGCGGGCAAAACTACCACAACTGAGCGTAT CCTAAAACTTACTGGTCAGATCCACAAAACTGGTGAAGTACATGATGGCGAATCTACGACTGACTTCATGGAACAGGAAG CTGAGCGCGGAATTACTATCCAGTCAGCAGCTGTAAGTTGTTTCTGGAAAGATCACCGTTTTAACGTTATCGATACTCCT GGACACGTTGACTTCACAGTTGAAGTTTACCGTTCACTAAAAGTACTTGACGGTGGTATCGGTGTATTCTGTGGTTCTGG TGGTGTTGAACCTCAATCAGAAACTAACTGGCGTTACGCGAACGAATCAGAAGTTGCACGTATTATCTTCGTTAACAAAC TAGACCGTATGGGTGCTGACTTCTTCCGTGTTATTAAGCAGACTGAAACAGTACTAGGTGCTAACCCACTAATCATGGTA CTACCTATCGGTATCGAAGATGATTTCGTTGGTGTTGTTGACCTTTTAACTCGCAAAGCTTTCGTTTGGGATGACACTGG TCTTCCTGAAAACTACGAAATCACTGATATCCCAGCGGATATGGTTGATCAAGTAGAAGAATACCGTGAGATGCTAGTTG AAACTGCTGTAGAGCAAGACGACGACCTAATGGAAGCTTACATGGAAGGCGAAGAGCCAACTATTGAGCAACTAAAAATG TGTATCCGTAAGGGTACTCGCACAATGGATTTCTTCCCTGCTTACTGTGGTTCTGCGTTTAAGAACAAAGGTATGCAACT AATCCTTGATGCTGTTGTTGATTACCTACCTTCTCCAACAGAAGTTGATCCTCAACCTCTAATGGATGAGAACGGCGAAG AAAATGGCGAGCACGCTATTGTTTCTGTTGATGAAACATTCAAAGCACTAGCATTCAAAATCATGGATGACCGTTTTGGT GCCCTAACTTTCGTTCGTATTTACTCTGGTAAATTGAACAAAGGCGACACAATTCTTAACTCATTCACAGGTAAAACTGA GCGTGTTGGCCGTATGGTTGAGATGCAAGCGAATGACCGTAATGAATTAACTTACGCACAAGCTGGTGACATCATCGCTA TCGTGGGTATGAAAAACGTGCAAACTGGTCACACTCTTTGTGATCCTAAGCACGAAGTAACACTTGAGCCAATGGTTTTC CCTGTACCAGTAATCTCAATCTCAGTAACGCCTAAAGATAAAGGCAGTACTGAGAAAATGGGTATTGCTATCGGTAAAAT GGTTGCAGAAGATCCATCTTTCCAAGTTGAAACTGACGAAGAAACTGGCGAAACAATCCTTAAAGGTATGGGTGAACTTC ACCTAGACATTAAAGTTGATATCCTTCGTCGTACATACGGTGTAGATCTTGCTGTTGGTCAACCTCAGGTAGCTTACCGT GAAACTATCACTCAACTTGTTGAAGATAGCTACACGCATAAGAAACAATCTGGTGGTTCTGGTCAGTTCGGTAAGATCGA CTACATCATGAAACCAGGCGAAGTTGGTTCAGGCTTCTCATTCAAGTCTTCTGTTGTGGGCGGTAACGTTCCTAAAGAAT TCTGGCCTGCAATCGAGAAAGGCTTCAAAGGCATGATGGATACTGGTGTTCTTGCTGGTTTCCCTGTTCTTGATGTTGAA ATCGAACTTCTTGACGGTGGCTTCCACGCAGTCGATTCATCTGCAGTAGCATTTGAAATCGCAGCGAAAGGCGCATTCCG TCAATCTATGCCTAAAGCTGGTGCACAACTTCTAGAACCAATCATGGCTGTAGACGTGTTCACTCCAGATGATCACGTTG GTGATGTAATCGGTGACCTTAACCGTCGTCGTGGCATGATCAAAGACCAAATGGCTGGCGTAACTGGTGTTCGTGTTAAA GCTGACATTCCTCTTTCAGAAATGTTTGGTTACATCGGTTCTCTACGTACAATGACTTCTGGTCGTGGTCAGTTCTCTAT GGAGTTCTCACATTACGCACCTTGTCCAATGAACGTTGCTGAGCAAGTAATCGTTGCAGTTAAAGAAGCTAACGCTAAGA AGTAA
Upstream 100 bases:
>100_bases TGGGGCTAAATTCTATCCAAAAATAGAACAAAGCATATACCAATTGACAGTTTATGTTATACTCTGCGCGCATTTTCTAT CCTATTAATAGAGTAAAACA
Downstream 100 bases:
>100_bases TTCTGGCTAACGCTCTTTAATTAAAAAAGCCCCGTAAGTGAAAACTTACGGGGCTTTTTATTTTTAAGCGATTAAATAAC GTAGATACAGAGACACTCTC
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G 2 [H]
Number of amino acids: Translated: 694; Mature: 693
Protein sequence:
>694_residues MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITIQSAAVSCFWKDHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARIIFVNKLDRMGADFFRVIKQTETVLGANPLIMV LPIGIEDDFVGVVDLLTRKAFVWDDTGLPENYEITDIPADMVDQVEEYREMLVETAVEQDDDLMEAYMEGEEPTIEQLKM CIRKGTRTMDFFPAYCGSAFKNKGMQLILDAVVDYLPSPTEVDPQPLMDENGEENGEHAIVSVDETFKALAFKIMDDRFG ALTFVRIYSGKLNKGDTILNSFTGKTERVGRMVEMQANDRNELTYAQAGDIIAIVGMKNVQTGHTLCDPKHEVTLEPMVF PVPVISISVTPKDKGSTEKMGIAIGKMVAEDPSFQVETDEETGETILKGMGELHLDIKVDILRRTYGVDLAVGQPQVAYR ETITQLVEDSYTHKKQSGGSGQFGKIDYIMKPGEVGSGFSFKSSVVGGNVPKEFWPAIEKGFKGMMDTGVLAGFPVLDVE IELLDGGFHAVDSSAVAFEIAAKGAFRQSMPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIKDQMAGVTGVRVK ADIPLSEMFGYIGSLRTMTSGRGQFSMEFSHYAPCPMNVAEQVIVAVKEANAKK
Sequences:
>Translated_694_residues MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITIQSAAVSCFWKDHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARIIFVNKLDRMGADFFRVIKQTETVLGANPLIMV LPIGIEDDFVGVVDLLTRKAFVWDDTGLPENYEITDIPADMVDQVEEYREMLVETAVEQDDDLMEAYMEGEEPTIEQLKM CIRKGTRTMDFFPAYCGSAFKNKGMQLILDAVVDYLPSPTEVDPQPLMDENGEENGEHAIVSVDETFKALAFKIMDDRFG ALTFVRIYSGKLNKGDTILNSFTGKTERVGRMVEMQANDRNELTYAQAGDIIAIVGMKNVQTGHTLCDPKHEVTLEPMVF PVPVISISVTPKDKGSTEKMGIAIGKMVAEDPSFQVETDEETGETILKGMGELHLDIKVDILRRTYGVDLAVGQPQVAYR ETITQLVEDSYTHKKQSGGSGQFGKIDYIMKPGEVGSGFSFKSSVVGGNVPKEFWPAIEKGFKGMMDTGVLAGFPVLDVE IELLDGGFHAVDSSAVAFEIAAKGAFRQSMPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIKDQMAGVTGVRVK ADIPLSEMFGYIGSLRTMTSGRGQFSMEFSHYAPCPMNVAEQVIVAVKEANAKK >Mature_693_residues TDLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITIQSAAVSCFWKDHRFNVIDTPG HVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARIIFVNKLDRMGADFFRVIKQTETVLGANPLIMVL PIGIEDDFVGVVDLLTRKAFVWDDTGLPENYEITDIPADMVDQVEEYREMLVETAVEQDDDLMEAYMEGEEPTIEQLKMC IRKGTRTMDFFPAYCGSAFKNKGMQLILDAVVDYLPSPTEVDPQPLMDENGEENGEHAIVSVDETFKALAFKIMDDRFGA LTFVRIYSGKLNKGDTILNSFTGKTERVGRMVEMQANDRNELTYAQAGDIIAIVGMKNVQTGHTLCDPKHEVTLEPMVFP VPVISISVTPKDKGSTEKMGIAIGKMVAEDPSFQVETDEETGETILKGMGELHLDIKVDILRRTYGVDLAVGQPQVAYRE TITQLVEDSYTHKKQSGGSGQFGKIDYIMKPGEVGSGFSFKSSVVGGNVPKEFWPAIEKGFKGMMDTGVLAGFPVLDVEI ELLDGGFHAVDSSAVAFEIAAKGAFRQSMPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIKDQMAGVTGVRVKA DIPLSEMFGYIGSLRTMTSGRGQFSMEFSHYAPCPMNVAEQVIVAVKEANAKK
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=700, Percent_Identity=42.4285714285714, Blast_Score=545, Evalue=1e-155, Organism=Homo sapiens, GI19923640, Length=711, Percent_Identity=36.1462728551336, Blast_Score=393, Evalue=1e-109, Organism=Homo sapiens, GI25306283, Length=396, Percent_Identity=41.4141414141414, Blast_Score=270, Evalue=4e-72, Organism=Homo sapiens, GI25306287, Length=290, Percent_Identity=45.5172413793103, Blast_Score=233, Evalue=4e-61, Organism=Homo sapiens, GI157426893, Length=159, Percent_Identity=39.622641509434, Blast_Score=109, Evalue=8e-24, Organism=Homo sapiens, GI94966754, Length=139, Percent_Identity=34.5323741007194, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI4503483, Length=153, Percent_Identity=36.6013071895425, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI310132016, Length=122, Percent_Identity=36.0655737704918, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI310110807, Length=122, Percent_Identity=36.0655737704918, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI310123363, Length=122, Percent_Identity=36.0655737704918, Blast_Score=71, Evalue=4e-12, Organism=Escherichia coli, GI1789738, Length=697, Percent_Identity=53.6585365853659, Blast_Score=737, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=503, Percent_Identity=24.0556660039761, Blast_Score=129, Evalue=5e-31, Organism=Escherichia coli, GI1788922, Length=155, Percent_Identity=36.1290322580645, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI48994988, Length=136, Percent_Identity=38.2352941176471, Blast_Score=94, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17533571, Length=695, Percent_Identity=39.136690647482, Blast_Score=478, Evalue=1e-135, Organism=Caenorhabditis elegans, GI17556745, Length=707, Percent_Identity=29.1371994342291, Blast_Score=290, Evalue=2e-78, Organism=Caenorhabditis elegans, GI17557151, Length=151, Percent_Identity=38.4105960264901, Blast_Score=104, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17506493, Length=159, Percent_Identity=36.4779874213836, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17552882, Length=135, Percent_Identity=32.5925925925926, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=31.3432835820896, Blast_Score=69, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6323098, Length=698, Percent_Identity=41.6905444126075, Blast_Score=545, Evalue=1e-156, Organism=Saccharomyces cerevisiae, GI6322359, Length=773, Percent_Identity=31.8240620957309, Blast_Score=344, Evalue=3e-95, Organism=Saccharomyces cerevisiae, GI6324707, Length=549, Percent_Identity=22.7686703096539, Blast_Score=95, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6320593, Length=549, Percent_Identity=22.7686703096539, Blast_Score=95, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6323320, Length=175, Percent_Identity=36.5714285714286, Blast_Score=94, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=180, Percent_Identity=30, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6324761, Length=135, Percent_Identity=34.8148148148148, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582462, Length=697, Percent_Identity=40.1721664275466, Blast_Score=532, Evalue=1e-151, Organism=Drosophila melanogaster, GI221458488, Length=739, Percent_Identity=32.2056833558863, Blast_Score=348, Evalue=8e-96, Organism=Drosophila melanogaster, GI78706572, Length=155, Percent_Identity=36.7741935483871, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI28574573, Length=171, Percent_Identity=32.7485380116959, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24585711, Length=151, Percent_Identity=37.7483443708609, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24585713, Length=151, Percent_Identity=37.7483443708609, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24585709, Length=151, Percent_Identity=37.7483443708609, Blast_Score=86, Evalue=9e-17,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 76398; Mature: 76267
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITI CCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEE QSAAVSCFWKDHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EHHHEEEEEECCCCEEECCCCCEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC NESEVARIIFVNKLDRMGADFFRVIKQTETVLGANPLIMVLPIGIEDDFVGVVDLLTRKA CCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCE FVWDDTGLPENYEITDIPADMVDQVEEYREMLVETAVEQDDDLMEAYMEGEEPTIEQLKM EEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH CIRKGTRTMDFFPAYCGSAFKNKGMQLILDAVVDYLPSPTEVDPQPLMDENGEENGEHAI HHHCCCCCHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE VSVDETFKALAFKIMDDRFGALTFVRIYSGKLNKGDTILNSFTGKTERVGRMVEMQANDR EEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHCCEEEECCCCC NELTYAQAGDIIAIVGMKNVQTGHTLCDPKHEVTLEPMVFPVPVISISVTPKDKGSTEKM CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEECEEEEEEECCCCCCCCHHH GIAIGKMVAEDPSFQVETDEETGETILKGMGELHLDIKVDILRRTYGVDLAVGQPQVAYR HHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCEEEEEEEEEEHHHHCCEEECCCCCHHHH ETITQLVEDSYTHKKQSGGSGQFGKIDYIMKPGEVGSGFSFKSSVVGGNVPKEFWPAIEK HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH GFKGMMDTGVLAGFPVLDVEIELLDGGFHAVDSSAVAFEIAAKGAFRQSMPKAGAQLLEP HHCCHHHCCHHCCCCEEEEEEEEECCCCEECCCCCEEEEEHHCCHHHHHCCHHHHHHHHH IMAVDVFTPDDHVGDVIGDLNRRRGMIKDQMAGVTGVRVKADIPLSEMFGYIGSLRTMTS HHHEEEECCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCC GRGQFSMEFSHYAPCPMNVAEQVIVAVKEANAKK CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure TDLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITI CCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEE QSAAVSCFWKDHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EHHHEEEEEECCCCEEECCCCCEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC NESEVARIIFVNKLDRMGADFFRVIKQTETVLGANPLIMVLPIGIEDDFVGVVDLLTRKA CCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCE FVWDDTGLPENYEITDIPADMVDQVEEYREMLVETAVEQDDDLMEAYMEGEEPTIEQLKM EEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH CIRKGTRTMDFFPAYCGSAFKNKGMQLILDAVVDYLPSPTEVDPQPLMDENGEENGEHAI HHHCCCCCHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE VSVDETFKALAFKIMDDRFGALTFVRIYSGKLNKGDTILNSFTGKTERVGRMVEMQANDR EEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHCCEEEECCCCC NELTYAQAGDIIAIVGMKNVQTGHTLCDPKHEVTLEPMVFPVPVISISVTPKDKGSTEKM CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEECEEEEEEECCCCCCCCHHH GIAIGKMVAEDPSFQVETDEETGETILKGMGELHLDIKVDILRRTYGVDLAVGQPQVAYR HHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCEEEEEEEEEEHHHHCCEEECCCCCHHHH ETITQLVEDSYTHKKQSGGSGQFGKIDYIMKPGEVGSGFSFKSSVVGGNVPKEFWPAIEK HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH GFKGMMDTGVLAGFPVLDVEIELLDGGFHAVDSSAVAFEIAAKGAFRQSMPKAGAQLLEP HHCCHHHCCHHCCCCEEEEEEEEECCCCEECCCCCEEEEEHHCCHHHHHCCHHHHHHHHH IMAVDVFTPDDHVGDVIGDLNRRRGMIKDQMAGVTGVRVKADIPLSEMFGYIGSLRTMTS HHHEEEECCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCC GRGQFSMEFSHYAPCPMNVAEQVIVAVKEANAKK CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA