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The map label for this gene is ygaD [H]

Identifier: 209694224

GI number: 209694224

Start: 701705

End: 702202

Strand: Direct

Name: ygaD [H]

Synonym: VSAL_I0633

Alternate gene names: 209694224

Gene position: 701705-702202 (Clockwise)

Preceding gene: 209694218

Following gene: 209694225

Centisome position: 21.1

GC content: 42.77

Gene sequence:

>498_bases
ATGGATATGATAAAAAATGCGCAACTCGCACAAAAAGTGGGAGAGTTATTAATGCAACAAGGAAAAATGATGGCGTGTTC
AGAATCTTGTACTGGCGGAGGCGTTGCATTTTGTGCTACTGAAAATGCAGGAAGTTCAGCATGGTTTGAACGAGGCTTTG
TGACGTACAGTAATGAAGCAAAACAAGATTCTCTTGGGGTGAACTTAGAGACTATTGGCCGTTTTGGCGCAGTGAGTGAA
GAAGTGGTAAAGGAAATGGCTTTTGGCACGCTAGCACACAGTGAAGCAGATATATCGGTGTCGATCAGTGGCATTGCAGG
CCCAGGAGGAGCGACAGAAGGGAAACCGATTGGTACGGTTTGTTTTGGCTTTGCTGACACCACTAATTGGCATGTAGAAA
GAACGGTCTATTTTACTGGTGATCGTACAAAAGTAAGACAATCTGCGATTGAATATGCATTTCTCACATTAAAGAAAAGG
CTATTAGAAGCGAATTAA

Upstream 100 bases:

>100_bases
CTAATAATTGAAGATAAATATTTGCTGTTAGAATACGTGAATCAAGACAGCAATCAAAGATAGAATAGATAAAATTCGAA
TCAAGATGGAAAGAATCTAA

Downstream 100 bases:

>100_bases
TTCAAGTGGTTAAGATTAATTTTAGATACCACGTTATCAAAATTAAATAAAAAATGAATTAAAGCTATAGACACTGTATG
AATAGACAGTATACTACTGG

Product: competence-damaged protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MDMIKNAQLAQKVGELLMQQGKMMACSESCTGGGVAFCATENAGSSAWFERGFVTYSNEAKQDSLGVNLETIGRFGAVSE
EVVKEMAFGTLAHSEADISVSISGIAGPGGATEGKPIGTVCFGFADTTNWHVERTVYFTGDRTKVRQSAIEYAFLTLKKR
LLEAN

Sequences:

>Translated_165_residues
MDMIKNAQLAQKVGELLMQQGKMMACSESCTGGGVAFCATENAGSSAWFERGFVTYSNEAKQDSLGVNLETIGRFGAVSE
EVVKEMAFGTLAHSEADISVSISGIAGPGGATEGKPIGTVCFGFADTTNWHVERTVYFTGDRTKVRQSAIEYAFLTLKKR
LLEAN
>Mature_165_residues
MDMIKNAQLAQKVGELLMQQGKMMACSESCTGGGVAFCATENAGSSAWFERGFVTYSNEAKQDSLGVNLETIGRFGAVSE
EVVKEMAFGTLAHSEADISVSISGIAGPGGATEGKPIGTVCFGFADTTNWHVERTVYFTGDRTKVRQSAIEYAFLTLKKR
LLEAN

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=53.8461538461538, Blast_Score=159, Evalue=1e-40,
Organism=Escherichia coli, GI1787818, Length=158, Percent_Identity=34.1772151898734, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17636; Mature: 17636

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMIKNAQLAQKVGELLMQQGKMMACSESCTGGGVAFCATENAGSSAWFERGFVTYSNEA
CCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCHHHHCCCEEECCCC
KQDSLGVNLETIGRFGAVSEEVVKEMAFGTLAHSEADISVSISGIAGPGGATEGKPIGTV
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECEECCCCCCCCCCCEEE
CFGFADTTNWHVERTVYFTGDRTKVRQSAIEYAFLTLKKRLLEAN
EEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDMIKNAQLAQKVGELLMQQGKMMACSESCTGGGVAFCATENAGSSAWFERGFVTYSNEA
CCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCHHHHCCCEEECCCC
KQDSLGVNLETIGRFGAVSEEVVKEMAFGTLAHSEADISVSISGIAGPGGATEGKPIGTV
CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECEECCCCCCCCCCCEEE
CFGFADTTNWHVERTVYFTGDRTKVRQSAIEYAFLTLKKRLLEAN
EEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]