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The map label for this gene is yjgF [C]

Identifier: 209694110

GI number: 209694110

Start: 572099

End: 572488

Strand: Reverse

Name: yjgF [C]

Synonym: VSAL_I0517

Alternate gene names: 209694110

Gene position: 572488-572099 (Counterclockwise)

Preceding gene: 209694111

Following gene: 209694109

Centisome position: 17.22

GC content: 41.03

Gene sequence:

>390_bases
ATGACTAAAGTACTTCATACAGATAACGCTCCAGCGGCAATTGGTCCATACATTCAAGGTGTTGATCTTGGTAGTATGGT
ACTGACTTCTGGCCAAATCCCTGTTAACCCTGCAACAGGTGAAGTATCTGATGATATCGCAGAGCAAGCACGCCAATCTC
TTGAGAATGTGAAAGCCGTTATTGAATCTTCAGGCCTAACGGTTTCTGATATCGTTAAAATGACGGTATTTGTGAAAGAC
TTAAATGACTTTGGTACAGTAAACGAAGTGTACGGCAACTTTTTTGATGAACATAACGTAGCAAATTACCCTGCTCGCTC
TTGCGTTGAAGTTGCGCGTCTTCCAAAAGATGTTGGTATCGAAATTGAAGCTATTGCTGTTCGTAAATAA

Upstream 100 bases:

>100_bases
CTCAGCCTCGATATTCTCGGGGCTGTTTTCTTATCCGCATTTGTTTTATATTGAGTTTATCGGTGAGCTTAAGTTCACTT
CATTCAAAAAGGAATAGATC

Downstream 100 bases:

>100_bases
CATTAACAAACAATAAATGAAATCAGATAAGGCAGACTTAATGAAAAGTACCTGCCTTATTTTTTATCCAAAAATTGGAT
TACTTTCGAATACACCGTTT

Product: Endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTKVLHTDNAPAAIGPYIQGVDLGSMVLTSGQIPVNPATGEVSDDIAEQARQSLENVKAVIESSGLTVSDIVKMTVFVKD
LNDFGTVNEVYGNFFDEHNVANYPARSCVEVARLPKDVGIEIEAIAVRK

Sequences:

>Translated_129_residues
MTKVLHTDNAPAAIGPYIQGVDLGSMVLTSGQIPVNPATGEVSDDIAEQARQSLENVKAVIESSGLTVSDIVKMTVFVKD
LNDFGTVNEVYGNFFDEHNVANYPARSCVEVARLPKDVGIEIEAIAVRK
>Mature_128_residues
TKVLHTDNAPAAIGPYIQGVDLGSMVLTSGQIPVNPATGEVSDDIAEQARQSLENVKAVIESSGLTVSDIVKMTVFVKDL
NDFGTVNEVYGNFFDEHNVANYPARSCVEVARLPKDVGIEIEAIAVRK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=129, Percent_Identity=42.6356589147287, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=74.4186046511628, Blast_Score=201, Evalue=1e-53,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=69.53125, Blast_Score=192, Evalue=6e-51,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=40.8, Blast_Score=110, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=40.8, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=40.8, Blast_Score=109, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=41.4634146341463, Blast_Score=96, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=109, Percent_Identity=40.3669724770642, Blast_Score=91, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=42.8571428571429, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13833; Mature: 13702

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLHTDNAPAAIGPYIQGVDLGSMVLTSGQIPVNPATGEVSDDIAEQARQSLENVKAV
CCCEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IESSGLTVSDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVANYPARSCVEVARLPKDVGI
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
EIEAIAVRK
EEEEEEECC
>Mature Secondary Structure 
TKVLHTDNAPAAIGPYIQGVDLGSMVLTSGQIPVNPATGEVSDDIAEQARQSLENVKAV
CCEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IESSGLTVSDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVANYPARSCVEVARLPKDVGI
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
EIEAIAVRK
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]