Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694109
Identifier: 209694109
GI number: 209694109
Start: 571459
End: 571728
Strand: Reverse
Name: 209694109
Synonym: VSAL_I0516
Alternate gene names: NA
Gene position: 571728-571459 (Counterclockwise)
Preceding gene: 209694110
Following gene: 209694108
Centisome position: 17.19
GC content: 38.15
Gene sequence:
>270_bases ATGCAAAAAGATAAAAAGAGAACACCAGAGCAATGGCACGCTCTATTTGAATCTCAGCAATCTAGCAAGCTTAGTGCCGC TGAATTTTGTCGTAACCATAATATTCTGCCAAAGACATTTAGTGCACGTAAAGCACGATGGAAACAAAAGATTAACGCCA CTCCACAATTACCAGATATTCAACTTTCTATCGGAAAATTGCGATTAACATTGCCAGCTAATACTGAACCTCACTGGATA GGACTCTTATTAAAAGGGTATCAATCATGA
Upstream 100 bases:
>100_bases TCGGCTTGATAGATAAACCGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTT CATTTAACGAGAACGTAATT
Downstream 100 bases:
>100_bases ATGTATTTACTGATGTTTCCACCATTTATCTTCATCGTGATTTTGTCGATTTTCGCAAGGCCATTAATGGCCTTGTCGTG ATTGTTGAGCAAGAAATGCA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 89; Mature: 89
Protein sequence:
>89_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINATPQLPDIQLSIGKLRLTLPANTEPHWI GLLLKGYQS
Sequences:
>Translated_89_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINATPQLPDIQLSIGKLRLTLPANTEPHWI GLLLKGYQS >Mature_89_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINATPQLPDIQLSIGKLRLTLPANTEPHWI GLLLKGYQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10295; Mature: 10295
Theoretical pI: Translated: 10.97; Mature: 10.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINATPQLPDI CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCE QLSIGKLRLTLPANTEPHWIGLLLKGYQS EEEECEEEEEECCCCCCCEEHEEECCCCC >Mature Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCRNHNILPKTFSARKARWKQKINATPQLPDI CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCE QLSIGKLRLTLPANTEPHWIGLLLKGYQS EEEECEEEEEECCCCCCCEEHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA