Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is galU [H]
Identifier: 209694047
GI number: 209694047
Start: 503682
End: 504551
Strand: Reverse
Name: galU [H]
Synonym: VSAL_I0448
Alternate gene names: 209694047
Gene position: 504551-503682 (Counterclockwise)
Preceding gene: 209694048
Following gene: 209694046
Centisome position: 15.17
GC content: 38.62
Gene sequence:
>870_bases ATGATCAAGAAATGTCTTTTTCCTGCCGCTGGCTACGGTACTCGTTTTCTTCCTGCGACTAAATCTATGCCAAAAGAAAT GATGCCAATCGTAAATAAACCGCTTATAGAATATGGCGTAGAAGAAGCTATCAATGCAGGCATGGACGGAATATGCATCG TCACTGGCCGTGGTAAGCATTCTTTAATGGATCACTTTGATAAAAACTACGAGCTAGAACACCAAATCAGTGGCACAAAT AAAGAAGAACTTCTTGAAGACGTTCGTGAATTAATTGACGCTGCACATTTTACTTATATTCGTCAAAGAGAAATGAAAGG TTTAGGTCATGCCATTCTTACTGGCCGTGAACTCATCGGCGATGAACCATTTGCTGTCGTACTTGCTGATGATTTATGTG TCAATGAAGAACAAGGCGTACTGTCTCAAATGGTTGCTTTGTATAAGCAATTCCGTTGTTCTATCGTTGCAGTAGAAGAA GTACCTGATAACGAAACGCATAAATACGGCGTTATTGCAGGTGAAATGATCAAAGACGATCTATACCGCATAGATAACAT GGTTGAAAAACCAGAACCAGGCACTGCACCAAGTAACCTTGCGATCATTGGTCGTTACATTCTAACACCAGATATCTTTG AGATTATTGAGCAAACAGAACCAGGTAAAGGTGGTGAAATCCAAATTACCGATGCGTTATTAAAGCAAGCTCAATCAGGT TGTGTTCTTGCTTATAAATTTAAAGGTAAGCGTTTTGACTGTGGTAGCGTTGAAGGTTATATCCAAGCAACAAACTACTG CTACGAAAATGTATATTTAAAAGATAAAAAATCAGCTGAATTAGCAAAACAAACAACAGGTAAAAAGTAA
Upstream 100 bases:
>100_bases GCTTCATTTACCCGTTATTAGTCGTTAAACTGATCATATAACGATGATGCTCAATCAAGAGCGCTTCCAATAATTTAAAT TTCGTCTTTAGGACTCAGTT
Downstream 100 bases:
>100_bases GCTCGTTTGTTTTAATTATTATTACGTCTTATGACATATCATAAGGCGTTTTTTTTCATTCTGAATCTCTCCTACCTTAT CATTACTGTTTTTTTATCCA
Product: UTP-glucose-1-phosphate uridylyltransferase
Products: NA
Alternate protein names: Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase [H]
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MIKKCLFPAAGYGTRFLPATKSMPKEMMPIVNKPLIEYGVEEAINAGMDGICIVTGRGKHSLMDHFDKNYELEHQISGTN KEELLEDVRELIDAAHFTYIRQREMKGLGHAILTGRELIGDEPFAVVLADDLCVNEEQGVLSQMVALYKQFRCSIVAVEE VPDNETHKYGVIAGEMIKDDLYRIDNMVEKPEPGTAPSNLAIIGRYILTPDIFEIIEQTEPGKGGEIQITDALLKQAQSG CVLAYKFKGKRFDCGSVEGYIQATNYCYENVYLKDKKSAELAKQTTGKK
Sequences:
>Translated_289_residues MIKKCLFPAAGYGTRFLPATKSMPKEMMPIVNKPLIEYGVEEAINAGMDGICIVTGRGKHSLMDHFDKNYELEHQISGTN KEELLEDVRELIDAAHFTYIRQREMKGLGHAILTGRELIGDEPFAVVLADDLCVNEEQGVLSQMVALYKQFRCSIVAVEE VPDNETHKYGVIAGEMIKDDLYRIDNMVEKPEPGTAPSNLAIIGRYILTPDIFEIIEQTEPGKGGEIQITDALLKQAQSG CVLAYKFKGKRFDCGSVEGYIQATNYCYENVYLKDKKSAELAKQTTGKK >Mature_289_residues MIKKCLFPAAGYGTRFLPATKSMPKEMMPIVNKPLIEYGVEEAINAGMDGICIVTGRGKHSLMDHFDKNYELEHQISGTN KEELLEDVRELIDAAHFTYIRQREMKGLGHAILTGRELIGDEPFAVVLADDLCVNEEQGVLSQMVALYKQFRCSIVAVEE VPDNETHKYGVIAGEMIKDDLYRIDNMVEKPEPGTAPSNLAIIGRYILTPDIFEIIEQTEPGKGGEIQITDALLKQAQSG CVLAYKFKGKRFDCGSVEGYIQATNYCYENVYLKDKKSAELAKQTTGKK
Specific function: May play a role in stationary phase survival [H]
COG id: COG1210
COG function: function code M; UDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDPGP type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787488, Length=272, Percent_Identity=43.3823529411765, Blast_Score=204, Evalue=5e-54, Organism=Escherichia coli, GI1788355, Length=278, Percent_Identity=38.4892086330935, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1790224, Length=267, Percent_Identity=26.9662921348315, Blast_Score=77, Evalue=1e-15,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005771 - InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.9 [H]
Molecular weight: Translated: 32254; Mature: 32254
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKCLFPAAGYGTRFLPATKSMPKEMMPIVNKPLIEYGVEEAINAGMDGICIVTGRGKH CCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCH SLMDHFDKNYELEHQISGTNKEELLEDVRELIDAAHFTYIRQREMKGLGHAILTGRELIG HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHC DEPFAVVLADDLCVNEEQGVLSQMVALYKQFRCSIVAVEEVPDNETHKYGVIAGEMIKDD CCCEEEEEECCHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEHHHHHHH LYRIDNMVEKPEPGTAPSNLAIIGRYILTPDIFEIIEQTEPGKGGEIQITDALLKQAQSG HHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCC CVLAYKFKGKRFDCGSVEGYIQATNYCYENVYLKDKKSAELAKQTTGKK CEEEEEECCCCCCCCCCCCCEEHHHHHHHCEEECCCHHHHHHHHHCCCC >Mature Secondary Structure MIKKCLFPAAGYGTRFLPATKSMPKEMMPIVNKPLIEYGVEEAINAGMDGICIVTGRGKH CCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCH SLMDHFDKNYELEHQISGTNKEELLEDVRELIDAAHFTYIRQREMKGLGHAILTGRELIG HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHC DEPFAVVLADDLCVNEEQGVLSQMVALYKQFRCSIVAVEEVPDNETHKYGVIAGEMIKDD CCCEEEEEECCHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEHHHHHHH LYRIDNMVEKPEPGTAPSNLAIIGRYILTPDIFEIIEQTEPGKGGEIQITDALLKQAQSG HHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCC CVLAYKFKGKRFDCGSVEGYIQATNYCYENVYLKDKKSAELAKQTTGKK CEEEEEECCCCCCCCCCCCCEEHHHHHHHCEEECCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]