Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694014
Identifier: 209694014
GI number: 209694014
Start: 450040
End: 450465
Strand: Reverse
Name: 209694014
Synonym: VSAL_I0413
Alternate gene names: NA
Gene position: 450465-450040 (Counterclockwise)
Preceding gene: 209694015
Following gene: 209694013
Centisome position: 13.55
GC content: 38.03
Gene sequence:
>426_bases ATGATTATGAAAAAGTTATTGTGTTTATTTATGTTGATATTTAGTCAATCCTCTTTTGCTTCAGACGCAATTTATACTGG CTTCTTTAGCAATAAAGCGATTGATGGTTATGACAGTGTTAGTTACTTCACTGCAGAAAAACCACTAAAAGGAAGCTCTG AATTTGTCACCTCTTATATGGATGCTGATTGGTATTTCGTTTCTCAAGAGAACTTAAATTTGTTCACCGCGAATCCGACA AAATACGCGCCTCAATACGGTGGTTTTTGTGCTTGGGCAGTGGCTGAAAAAAATGACCGCGCGCCTGGTGACCCGAATCA ATTTTCAATTGTAGATGGAAAGCTGTATTTAAATTATGACGCGGGTGTCAAAACCTTATGGGAAAAAGACATTCAAGGCT TCATCACACAAGGCGATAAAAACTGA
Upstream 100 bases:
>100_bases TTTTTCAGGCTCACCATGCCAAACAAAAAAGTATTTGGCCTATGATGTTCCTTTCCATTCATACAACAACACCCACTCAT ACAGTTAATATTATAAGGTC
Downstream 100 bases:
>100_bases CCCAAGCTACTAGAAAAGTAAGCGGTCACAATTAAAAAACACAGCCAACCAAAAATCATAAAAGGAAATAATGATGAAAG AAAAATTACTAAAGTATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: YHS Domain-Containing Protein; YHS Domain Family; Tat Pathway Signal Sequence Domain Protein
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN
Sequences:
>Translated_141_residues MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN >Mature_141_residues MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15882; Mature: 15882
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYM CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHC DADWYFVSQENLNLFTANPTKYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYD CCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEEC AGVKTLWEKDIQGFITQGDKN CCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYM CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHC DADWYFVSQENLNLFTANPTKYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYD CCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEEC AGVKTLWEKDIQGFITQGDKN CCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA