Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694015
Identifier: 209694015
GI number: 209694015
Start: 450478
End: 451224
Strand: Reverse
Name: 209694015
Synonym: VSAL_I0414
Alternate gene names: NA
Gene position: 451224-450478 (Counterclockwise)
Preceding gene: 209694016
Following gene: 209694014
Centisome position: 13.57
GC content: 39.63
Gene sequence:
>747_bases ATGTGCACAGTCTCTTGGTTCAACACGCCTACAGGATATGAATTATTTTTTAATCGTGACGAACAGCGGTCTCGCTCTGA TGCATTAACACCTCAGGTGTTTCAAGAAAATAATGTGGATTACATTATGCCAATTGATCCTGTCGGCGGAGGCAGTTGGA TTTCACTCAATAATCACGGTATTTCAATCTGTCTGTTAAATTATTATCAGGGGTCTACACCACCAAATAACGCGTTAAGC CGTGGTCTTCTTATCAAAGAATTAGCCACCTGCCATCATATAGATTCAATTCAACACGTTCTTTCTAAAATGGATTTCTC TCATTTTGCCTCTTTTACACTATTAATTTTTCCTTCCACGGCATCCAATGAAAATAATACCGTTAAAGGATTTCGCTGGG ATGGACAGAGCTTTGATTCAATAACTCCGATCTCTCCTATGATCTCTTCATCCGTGGATGCCAAAAGCGTTATTGAACAC CGTTTGTCAGTATACAAAGAACTCACCGATTCAGGCGTAAACCGTCAAACACTGAATACGTTCCATCAACATCATCATGT AAAACTAGGACATCGCTCCCCTTGCATGCATCGTCAAGATGCCCAAACCGTCAGTTTTACGCACATCATTGTCGATAATG AAAATAATACATTACGTTATTTTTCAGGCTCACCATGCCAAACAAAAAAGTATTTGGCCTATGATGTTCCTTTCCATTCA TACAACAACACCCACTCATACAGTTAA
Upstream 100 bases:
>100_bases ACGCGTTAATAAAAGTCATCACCTTATCCATTGGCATAAACACGCAATCAACGTTTGGTTTCGCGCCGACAACAACGACC TATTTACGGGGAGAAGCCTA
Downstream 100 bases:
>100_bases TATTATAAGGTCATGATTATGAAAAAGTTATTGTGTTTATTTATGTTGATATTTAGTCAATCCTCTTTTGCTTCAGACGC AATTTATACTGGCTTCTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MCTVSWFNTPTGYELFFNRDEQRSRSDALTPQVFQENNVDYIMPIDPVGGGSWISLNNHGISICLLNYYQGSTPPNNALS RGLLIKELATCHHIDSIQHVLSKMDFSHFASFTLLIFPSTASNENNTVKGFRWDGQSFDSITPISPMISSSVDAKSVIEH RLSVYKELTDSGVNRQTLNTFHQHHHVKLGHRSPCMHRQDAQTVSFTHIIVDNENNTLRYFSGSPCQTKKYLAYDVPFHS YNNTHSYS
Sequences:
>Translated_248_residues MCTVSWFNTPTGYELFFNRDEQRSRSDALTPQVFQENNVDYIMPIDPVGGGSWISLNNHGISICLLNYYQGSTPPNNALS RGLLIKELATCHHIDSIQHVLSKMDFSHFASFTLLIFPSTASNENNTVKGFRWDGQSFDSITPISPMISSSVDAKSVIEH RLSVYKELTDSGVNRQTLNTFHQHHHVKLGHRSPCMHRQDAQTVSFTHIIVDNENNTLRYFSGSPCQTKKYLAYDVPFHS YNNTHSYS >Mature_248_residues MCTVSWFNTPTGYELFFNRDEQRSRSDALTPQVFQENNVDYIMPIDPVGGGSWISLNNHGISICLLNYYQGSTPPNNALS RGLLIKELATCHHIDSIQHVLSKMDFSHFASFTLLIFPSTASNENNTVKGFRWDGQSFDSITPISPMISSSVDAKSVIEH RLSVYKELTDSGVNRQTLNTFHQHHHVKLGHRSPCMHRQDAQTVSFTHIIVDNENNTLRYFSGSPCQTKKYLAYDVPFHS YNNTHSYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28165; Mature: 28165
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCTVSWFNTPTGYELFFNRDEQRSRSDALTPQVFQENNVDYIMPIDPVGGGSWISLNNHG CEEEEECCCCCCEEEEECCCHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCEEEECCCC ISICLLNYYQGSTPPNNALSRGLLIKELATCHHIDSIQHVLSKMDFSHFASFTLLIFPST EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEEEECC ASNENNTVKGFRWDGQSFDSITPISPMISSSVDAKSVIEHRLSVYKELTDSGVNRQTLNT CCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH FHQHHHVKLGHRSPCMHRQDAQTVSFTHIIVDNENNTLRYFSGSPCQTKKYLAYDVPFHS HHHHCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCC YNNTHSYS CCCCCCCC >Mature Secondary Structure MCTVSWFNTPTGYELFFNRDEQRSRSDALTPQVFQENNVDYIMPIDPVGGGSWISLNNHG CEEEEECCCCCCEEEEECCCHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCEEEECCCC ISICLLNYYQGSTPPNNALSRGLLIKELATCHHIDSIQHVLSKMDFSHFASFTLLIFPST EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEEEECC ASNENNTVKGFRWDGQSFDSITPISPMISSSVDAKSVIEHRLSVYKELTDSGVNRQTLNT CCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH FHQHHHVKLGHRSPCMHRQDAQTVSFTHIIVDNENNTLRYFSGSPCQTKKYLAYDVPFHS HHHHCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCC YNNTHSYS CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA