Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694013
Identifier: 209694013
GI number: 209694013
Start: 449511
End: 449969
Strand: Reverse
Name: 209694013
Synonym: VSAL_I0412
Alternate gene names: NA
Gene position: 449969-449511 (Counterclockwise)
Preceding gene: 209694014
Following gene: 209694012
Centisome position: 13.53
GC content: 38.78
Gene sequence:
>459_bases ATGATGAAAGAAAAATTACTAAAGTATGGCCCTTCTGTTTTTATCGCATTTGTTTTTATTCAATCACTGTTTTTTAAATT TACCGGATCTTATGAAACGGACCATATTTTTGGTGTGCTTGCAGAATGGTCTGGGATTACTTGGTTTGGTGTCAATGGTG GGTATTTAATCGGAACCGCAGAGCTTATTGCCTCTCTTCTATTATTTACTCGTTTCCATGGCTTAGGCGCAATAATGACA GTCGGAATAATGAGTGGCGCTATCTTCTTTCATTTATTTACCCCTCTTGGCATTCAAATGCCTGAGTTTAATTCGGTAGG GAACATCATAGGCTACGACGGGGGACTTCTCTTTGGTATGGCTTGCTTAGTATGGTTGTGTGGCGTATTTCTTTCAGTTC GAGATCTTAAGTCTGACAATGGCTTTTTGGCCTTATTGCTTAATTCAAAAGGGATATAA
Upstream 100 bases:
>100_bases GGCTTCATCACACAAGGCGATAAAAACTGACCCAAGCTACTAGAAAAGTAAGCGGTCACAATTAAAAAACACAGCCAACC AAAAATCATAAAAGGAAATA
Downstream 100 bases:
>100_bases TGTATGGTGACGAGTCCATTTCGACTTCCTAGAGTGACTCCTTTTGGCCTTGGTGAATCTTTTGCCGAATGGGTAACGGG GTTAAATCGGTTAGATACAC
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MMKEKLLKYGPSVFIAFVFIQSLFFKFTGSYETDHIFGVLAEWSGITWFGVNGGYLIGTAELIASLLLFTRFHGLGAIMT VGIMSGAIFFHLFTPLGIQMPEFNSVGNIIGYDGGLLFGMACLVWLCGVFLSVRDLKSDNGFLALLLNSKGI
Sequences:
>Translated_152_residues MMKEKLLKYGPSVFIAFVFIQSLFFKFTGSYETDHIFGVLAEWSGITWFGVNGGYLIGTAELIASLLLFTRFHGLGAIMT VGIMSGAIFFHLFTPLGIQMPEFNSVGNIIGYDGGLLFGMACLVWLCGVFLSVRDLKSDNGFLALLLNSKGI >Mature_152_residues MMKEKLLKYGPSVFIAFVFIQSLFFKFTGSYETDHIFGVLAEWSGITWFGVNGGYLIGTAELIASLLLFTRFHGLGAIMT VGIMSGAIFFHLFTPLGIQMPEFNSVGNIIGYDGGLLFGMACLVWLCGVFLSVRDLKSDNGFLALLLNSKGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16640; Mature: 16640
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKEKLLKYGPSVFIAFVFIQSLFFKFTGSYETDHIFGVLAEWSGITWFGVNGGYLIGTA CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEHH ELIASLLLFTRFHGLGAIMTVGIMSGAIFFHLFTPLGIQMPEFNSVGNIIGYDGGLLFGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHH ACLVWLCGVFLSVRDLKSDNGFLALLLNSKGI HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC >Mature Secondary Structure MMKEKLLKYGPSVFIAFVFIQSLFFKFTGSYETDHIFGVLAEWSGITWFGVNGGYLIGTA CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEHH ELIASLLLFTRFHGLGAIMTVGIMSGAIFFHLFTPLGIQMPEFNSVGNIIGYDGGLLFGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHH ACLVWLCGVFLSVRDLKSDNGFLALLLNSKGI HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA