| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693986
Identifier: 209693986
GI number: 209693986
Start: 423817
End: 425037
Strand: Direct
Name: 209693986
Synonym: VSAL_I0384
Alternate gene names: NA
Gene position: 423817-425037 (Clockwise)
Preceding gene: 209693985
Following gene: 209693987
Centisome position: 12.75
GC content: 41.77
Gene sequence:
>1221_bases ATGAGAGTTAATTTGAAACAACTGTTCTTAAGAAGCGCTACTGGTTTAGCGCTTTTTCTTATTTCACCTTATGTCTTTTC TGAAAGTGATATATGGCCAAACTCGCTTCCTGAAACGGCAGCGGTTCCTTTTATGTATTCTTCAGAAAGCTTGGGGACTA CGATAGGCGTTGCCGGTGTAATGAAAGGTGTGGGGCAACCTCAAGCCACCTTATTTGCTGCCGGAATGTACTCAAGTAAA GGTTCTTATCTCACTTACTTGTCATCTGATAACAATCAAGTGGGTCATTCTTGGTTATTTGGTGCAAATGCTTATAACGC CAGCTTTAAAGATATGGATTATTATATTGGTACCGCAGGAAGTAACAATTCTCATCAAAGTGACGAAGTGTTTACCGACA GTACTGAAGCTCAATACCATCTGACGGCTAATTATATTTTACCCATTGGTAATGCCAAGGATATCGGGGCTCAAGCCGCG TATACTCCAAATCGTAAAGTAAAAAGTGGTAATCCATTTGACAGTGGGGTTTCAAGTATTGAGCTTAGCCCTTTCTATTA TTCTCGTACATTATCAGATGTCTCCGATTGGGATGAGCCTGAATCGAATTGGGGAATGAAGGTAAATTTTGATTGGGATA ATAGAAATAGCGTAAGAAATACGACCAATGGTTCACGAACAGAGTTAGATTTCACTTACTCTCCAGAAACCAGTTCACAA GAAGAGTGGTGGACATGGGAGTTTCAACAAAGTGCCTTTTTTGATTTAGGCGGGATTGGCAATGTAATTAAGAAACAAGT GCTTGCGTTTGATTTTTATCTTGCTGATACACCCAGTTGGGAAGACGGCGCACACCAACCTCCTGAATACGCTGGAATTA AATTAGGCGGACTTTATCGATTAAGGAGCTATGGTGGTGGACGATTCCATGGTCGTTCTGCCGTTCATTATTCTGCAGAG TATCGAGTGATGCCCGATTGGCAGCCATTAGAAGATTGGCCTATTTTTAATCTTTATGATGTGCCTTGGTGGCAGTGGGT GGCTTTTGTTGATACTGGTCGTGTAGCGGATGAGTTTTCATTATCGACATTGCATGATGATATGCGATGGAGTGCTGGTG GTGCGATTCGTTTCCAAGTTGAAGGTATCGTCGTTCGTACTGAAATGGCGTGGGGAAGTGAAGAAAATGTATTTCGCGTC ATGATCAATCAGCCATTTTAA
Upstream 100 bases:
>100_bases AAGAAGTAGCAGAACACATTGGAACTATTGCTTATGAGTTAGTGACTAAACTAACATCAAGAGTACAAATGCAATATATT CCTTAATGTATCTTTGACCC
Downstream 100 bases:
>100_bases ATTTAGCACTAGTTTTATCGTTATTTGAACGAGATAATGTTCACATATAGACGTTTTAATGTGACCTAACTCAAAAAGGG TGAGCGTAGTTTTGGTCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MRVNLKQLFLRSATGLALFLISPYVFSESDIWPNSLPETAAVPFMYSSESLGTTIGVAGVMKGVGQPQATLFAAGMYSSK GSYLTYLSSDNNQVGHSWLFGANAYNASFKDMDYYIGTAGSNNSHQSDEVFTDSTEAQYHLTANYILPIGNAKDIGAQAA YTPNRKVKSGNPFDSGVSSIELSPFYYSRTLSDVSDWDEPESNWGMKVNFDWDNRNSVRNTTNGSRTELDFTYSPETSSQ EEWWTWEFQQSAFFDLGGIGNVIKKQVLAFDFYLADTPSWEDGAHQPPEYAGIKLGGLYRLRSYGGGRFHGRSAVHYSAE YRVMPDWQPLEDWPIFNLYDVPWWQWVAFVDTGRVADEFSLSTLHDDMRWSAGGAIRFQVEGIVVRTEMAWGSEENVFRV MINQPF
Sequences:
>Translated_406_residues MRVNLKQLFLRSATGLALFLISPYVFSESDIWPNSLPETAAVPFMYSSESLGTTIGVAGVMKGVGQPQATLFAAGMYSSK GSYLTYLSSDNNQVGHSWLFGANAYNASFKDMDYYIGTAGSNNSHQSDEVFTDSTEAQYHLTANYILPIGNAKDIGAQAA YTPNRKVKSGNPFDSGVSSIELSPFYYSRTLSDVSDWDEPESNWGMKVNFDWDNRNSVRNTTNGSRTELDFTYSPETSSQ EEWWTWEFQQSAFFDLGGIGNVIKKQVLAFDFYLADTPSWEDGAHQPPEYAGIKLGGLYRLRSYGGGRFHGRSAVHYSAE YRVMPDWQPLEDWPIFNLYDVPWWQWVAFVDTGRVADEFSLSTLHDDMRWSAGGAIRFQVEGIVVRTEMAWGSEENVFRV MINQPF >Mature_406_residues MRVNLKQLFLRSATGLALFLISPYVFSESDIWPNSLPETAAVPFMYSSESLGTTIGVAGVMKGVGQPQATLFAAGMYSSK GSYLTYLSSDNNQVGHSWLFGANAYNASFKDMDYYIGTAGSNNSHQSDEVFTDSTEAQYHLTANYILPIGNAKDIGAQAA YTPNRKVKSGNPFDSGVSSIELSPFYYSRTLSDVSDWDEPESNWGMKVNFDWDNRNSVRNTTNGSRTELDFTYSPETSSQ EEWWTWEFQQSAFFDLGGIGNVIKKQVLAFDFYLADTPSWEDGAHQPPEYAGIKLGGLYRLRSYGGGRFHGRSAVHYSAE YRVMPDWQPLEDWPIFNLYDVPWWQWVAFVDTGRVADEFSLSTLHDDMRWSAGGAIRFQVEGIVVRTEMAWGSEENVFRV MINQPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45701; Mature: 45701
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVNLKQLFLRSATGLALFLISPYVFSESDIWPNSLPETAAVPFMYSSESLGTTIGVAGV CCCCHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHH MKGVGQPQATLFAAGMYSSKGSYLTYLSSDNNQVGHSWLFGANAYNASFKDMDYYIGTAG HHCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECC SNNSHQSDEVFTDSTEAQYHLTANYILPIGNAKDIGAQAAYTPNRKVKSGNPFDSGVSSI CCCCCCCCCEECCCCCCEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEE ELSPFYYSRTLSDVSDWDEPESNWGMKVNFDWDNRNSVRNTTNGSRTELDFTYSPETSSQ EECCEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC EEWWTWEFQQSAFFDLGGIGNVIKKQVLAFDFYLADTPSWEDGAHQPPEYAGIKLGGLYR CCEEEEEECCCCEEECCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEECCEEE LRSYGGGRFHGRSAVHYSAEYRVMPDWQPLEDWPIFNLYDVPWWQWVAFVDTGRVADEFS EECCCCCEECCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCHHEEEEEEECCCCCCCCC LSTLHDDMRWSAGGAIRFQVEGIVVRTEMAWGSEENVFRVMINQPF HHHHHHCCEECCCCEEEEEEEEEEEEEEECCCCCCCEEEEEECCCC >Mature Secondary Structure MRVNLKQLFLRSATGLALFLISPYVFSESDIWPNSLPETAAVPFMYSSESLGTTIGVAGV CCCCHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHH MKGVGQPQATLFAAGMYSSKGSYLTYLSSDNNQVGHSWLFGANAYNASFKDMDYYIGTAG HHCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECC SNNSHQSDEVFTDSTEAQYHLTANYILPIGNAKDIGAQAAYTPNRKVKSGNPFDSGVSSI CCCCCCCCCEECCCCCCEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEE ELSPFYYSRTLSDVSDWDEPESNWGMKVNFDWDNRNSVRNTTNGSRTELDFTYSPETSSQ EECCEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC EEWWTWEFQQSAFFDLGGIGNVIKKQVLAFDFYLADTPSWEDGAHQPPEYAGIKLGGLYR CCEEEEEECCCCEEECCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEECCEEE LRSYGGGRFHGRSAVHYSAEYRVMPDWQPLEDWPIFNLYDVPWWQWVAFVDTGRVADEFS EECCCCCEECCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCHHEEEEEEECCCCCCCCC LSTLHDDMRWSAGGAIRFQVEGIVVRTEMAWGSEENVFRVMINQPF HHHHHHCCEECCCCEEEEEEEEEEEEEEECCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA