Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is ydiY [C]
Identifier: 209693983
GI number: 209693983
Start: 420124
End: 421125
Strand: Reverse
Name: ydiY [C]
Synonym: VSAL_I0381
Alternate gene names: 209693983
Gene position: 421125-420124 (Counterclockwise)
Preceding gene: 209693988
Following gene: 209693980
Centisome position: 12.66
GC content: 39.72
Gene sequence:
>1002_bases GTGTTAAAAAAAGTTTTACTTACAGGGCTTATCGCAATCAATGCATCTGTTCATGCAAGTGAGATTGAAAGTGAAGACGC GGATACGTCACCTCCCTCTCCTAGGGAAAGCCAAGTCGAATTGGGTTATGGAAGCGACAACTCACTATCTCTTAATTGTA GCCTAGAGCCGGTTTATACCTCTGGGCAGAATAGTCATGCCAGTGACGTAAAGTATTACTTATCAAAAGATGAGTGTGAA ACCGACACTGAGCAGCTAACCCTTGAGAAAAAACCAAGCATCAGTGTTCCGACAAGTGAGATCGATACAGAAGACGACGA TACATCACCACCTTCTCCATGGGAAAGCCAAGTCGAATTTGGTTATCAATCAAGCAAAGGTAACGATGATTCACAGTCTC TTAATGGTCGCTTAGAAGCAAGTTACACGTCTGGACAGCATCGTCACACAGGTGAAGTGAAGTATTATTTATCAAAAGAA GATGGCGAAACAGACAAAGACCAATTAAGCCTTAATTTACAAAGTGACTATAAAATAAGTCCTGATTACTATCTTTATGC CAACTTTAAAGGCTTAGAGACGGAATACAGTGCCTATTTTAAAGATTATACCTTTTCAGGTGGTTTAGGTTACCAAGCCA GTAATACGGAAAAGTTAGTATTAGAATTAGAATTAGGCCCTGGTTACCGTTATCAAAATCCAAATCTTGACGAGATAGAT GATGACGATCTTATTTTTCCAGAAACAGTGGCAGAAGCGATCTTACGAACAAACATTACCGTATCGTGGAAACCAATGGA CGTATTAACGCTTGCTTCTGAAGTCACTGTCACCAGCGGTCGAAGTAACACGCGTATCGATTCTGAAGTGAGCCTAACAA ATAACATTACAGAAGAAATCGCCCTGAAGATCGCACAATCTCAAGAATATTTAGATCGTGTACCTCCAGGATTAAGCAAA ACTGATTCTGTTATTTCAGTTAACTTATTATTTCTCTTCTAA
Upstream 100 bases:
>100_bases GATAACCTTTCGCAAAATAAAGATTTTGACTCAAATTTAACTCATCAACCAGATAAACTCCTATACTATGTGTCCTCTTT ATTCTTTCTGAGATTAATAC
Downstream 100 bases:
>100_bases ATAAAGTTGAATCCCGCCATTCTCAATGTAACTCTTCATGCTTTTTCACTAATCCAAAATCAGCCAAGATGGCATAAGCG GCAGGGATCATGAAGAGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK TDSVISVNLLFLF
Sequences:
>Translated_333_residues MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK TDSVISVNLLFLF >Mature_333_residues MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK TDSVISVNLLFLF
Specific function: Unknown
COG id: COG3137
COG function: function code M; Putative salt-induced outer membrane protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36972; Mature: 36972
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYT CCHHHHHHHHEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE SGQNSHASDVKYYLSKDECETDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEF CCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC GYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKEDGETDKDQLSLNLQSDYKIS CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHEEEEECCCEEEC PDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID CCEEEEEECCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCC DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEI CCCEECHHHHHHHHHHCCCEEEECCCEEEEECCEEEEECCCCCCCCCCEEEHHHHHHHHH ALKIAQSQEYLDRVPPGLSKTDSVISVNLLFLF HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYT CCHHHHHHHHEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE SGQNSHASDVKYYLSKDECETDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEF CCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC GYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKEDGETDKDQLSLNLQSDYKIS CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHEEEEECCCEEEC PDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID CCEEEEEECCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCC DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEI CCCEECHHHHHHHHHHCCCEEEECCCEEEEECCEEEEECCCCCCCCCCEEEHHHHHHHHH ALKIAQSQEYLDRVPPGLSKTDSVISVNLLFLF HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA