The gene/protein map for NC_011312 is currently unavailable.
Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is ydiY [C]

Identifier: 209693983

GI number: 209693983

Start: 420124

End: 421125

Strand: Reverse

Name: ydiY [C]

Synonym: VSAL_I0381

Alternate gene names: 209693983

Gene position: 421125-420124 (Counterclockwise)

Preceding gene: 209693988

Following gene: 209693980

Centisome position: 12.66

GC content: 39.72

Gene sequence:

>1002_bases
GTGTTAAAAAAAGTTTTACTTACAGGGCTTATCGCAATCAATGCATCTGTTCATGCAAGTGAGATTGAAAGTGAAGACGC
GGATACGTCACCTCCCTCTCCTAGGGAAAGCCAAGTCGAATTGGGTTATGGAAGCGACAACTCACTATCTCTTAATTGTA
GCCTAGAGCCGGTTTATACCTCTGGGCAGAATAGTCATGCCAGTGACGTAAAGTATTACTTATCAAAAGATGAGTGTGAA
ACCGACACTGAGCAGCTAACCCTTGAGAAAAAACCAAGCATCAGTGTTCCGACAAGTGAGATCGATACAGAAGACGACGA
TACATCACCACCTTCTCCATGGGAAAGCCAAGTCGAATTTGGTTATCAATCAAGCAAAGGTAACGATGATTCACAGTCTC
TTAATGGTCGCTTAGAAGCAAGTTACACGTCTGGACAGCATCGTCACACAGGTGAAGTGAAGTATTATTTATCAAAAGAA
GATGGCGAAACAGACAAAGACCAATTAAGCCTTAATTTACAAAGTGACTATAAAATAAGTCCTGATTACTATCTTTATGC
CAACTTTAAAGGCTTAGAGACGGAATACAGTGCCTATTTTAAAGATTATACCTTTTCAGGTGGTTTAGGTTACCAAGCCA
GTAATACGGAAAAGTTAGTATTAGAATTAGAATTAGGCCCTGGTTACCGTTATCAAAATCCAAATCTTGACGAGATAGAT
GATGACGATCTTATTTTTCCAGAAACAGTGGCAGAAGCGATCTTACGAACAAACATTACCGTATCGTGGAAACCAATGGA
CGTATTAACGCTTGCTTCTGAAGTCACTGTCACCAGCGGTCGAAGTAACACGCGTATCGATTCTGAAGTGAGCCTAACAA
ATAACATTACAGAAGAAATCGCCCTGAAGATCGCACAATCTCAAGAATATTTAGATCGTGTACCTCCAGGATTAAGCAAA
ACTGATTCTGTTATTTCAGTTAACTTATTATTTCTCTTCTAA

Upstream 100 bases:

>100_bases
GATAACCTTTCGCAAAATAAAGATTTTGACTCAAATTTAACTCATCAACCAGATAAACTCCTATACTATGTGTCCTCTTT
ATTCTTTCTGAGATTAATAC

Downstream 100 bases:

>100_bases
ATAAAGTTGAATCCCGCCATTCTCAATGTAACTCTTCATGCTTTTTCACTAATCCAAAATCAGCCAAGATGGCATAAGCG
GCAGGGATCATGAAGAGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Protein

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE
TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE
DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID
DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK
TDSVISVNLLFLF

Sequences:

>Translated_333_residues
MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE
TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE
DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID
DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK
TDSVISVNLLFLF
>Mature_333_residues
MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYTSGQNSHASDVKYYLSKDECE
TDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEFGYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKE
DGETDKDQLSLNLQSDYKISPDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID
DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEIALKIAQSQEYLDRVPPGLSK
TDSVISVNLLFLF

Specific function: Unknown

COG id: COG3137

COG function: function code M; Putative salt-induced outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36972; Mature: 36972

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYT
CCHHHHHHHHEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
SGQNSHASDVKYYLSKDECETDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEF
CCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
GYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKEDGETDKDQLSLNLQSDYKIS
CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHEEEEECCCEEEC
PDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID
CCEEEEEECCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCC
DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEI
CCCEECHHHHHHHHHHCCCEEEECCCEEEEECCEEEEECCCCCCCCCCEEEHHHHHHHHH
ALKIAQSQEYLDRVPPGLSKTDSVISVNLLFLF
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MLKKVLLTGLIAINASVHASEIESEDADTSPPSPRESQVELGYGSDNSLSLNCSLEPVYT
CCHHHHHHHHEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
SGQNSHASDVKYYLSKDECETDTEQLTLEKKPSISVPTSEIDTEDDDTSPPSPWESQVEF
CCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
GYQSSKGNDDSQSLNGRLEASYTSGQHRHTGEVKYYLSKEDGETDKDQLSLNLQSDYKIS
CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHEEEEECCCEEEC
PDYYLYANFKGLETEYSAYFKDYTFSGGLGYQASNTEKLVLELELGPGYRYQNPNLDEID
CCEEEEEECCCCCHHHHHHHHCEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCC
DDDLIFPETVAEAILRTNITVSWKPMDVLTLASEVTVTSGRSNTRIDSEVSLTNNITEEI
CCCEECHHHHHHHHHHCCCEEEECCCEEEEECCEEEEECCCCCCCCCCEEEHHHHHHHHH
ALKIAQSQEYLDRVPPGLSKTDSVISVNLLFLF
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA