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The map label for this gene is ybcK [H]

Identifier: 197120036

GI number: 197120036

Start: 4202142

End: 4203779

Strand: Direct

Name: ybcK [H]

Synonym: Gbem_3675

Alternate gene names: 197120036

Gene position: 4202142-4203779 (Clockwise)

Preceding gene: 197120029

Following gene: 197120037

Centisome position: 91.05

GC content: 54.95

Gene sequence:

>1638_bases
ATGGCACGGGCATTCAGTTATCTTCGATTCAGCAGACCAGAACAGCGCAAGGGCGACAGCCTCAGGCGGCAGACCGAAGC
AGCCAGGGAGTACGCAGACCGACACAACCTTGCCCTTGATGATTTCTCATTCCGCGACTTGGGGCACTCGGCCTACCGTG
GCAGTCATGCAGAGATAGGAGGTCTCAGCCAGTTCCTTGCAGCGATTGACACAGGGCACGTGAAGCCCGGTGACTACCTG
CTGATTGAAAACTTCGACAGGCTATCAAGGCAGGTATTAGACGAGGCATTCGACCTGCTACGCACGATCTGCAACAAGGG
TATCTCTGTTGTAACTCTCCAGGATGGGAATATCTACGACAAGGAAAGTCTTAGCCGTAACTTTGCCTCTCTGATGTGGG
CGCTGTTCGCCTTTGCCAGGGCACACGACGAAAGTGCTGTTAAGTCTGACAGGCTCCTCAGCACCTGGCACAACAAGCGT
AAAGACATGCGCGTCAAGCCTCTCACTGGCAAGCTGCCGGGATGGCTGAGGCTGAGCGCTGAAAAGCAGATTACTGTCAT
TGAGGATCGCGCTGAGGTGGTCAAGGAGATTTTCACGAGGTACGTTGAGGGCCAGTCTCCAAGAACCATAGTGAACCGGC
TGAACCAGAACAATGTCGAGTGCTGGGGCATCGGCAAGCAGAAGTCGAAGAAGTGGAACTCCTCCTACATCCAGAAGATA
CTGGACAACGAGTCCGTCATTGGGCGCTTCACACCGCATAAGATAATGTTCGAGGGGATCAAGAAGACGAGAGTCCCGCT
CGAAACGGTCAATGACTACTTCCCGGTGATCATAGACGCTGAAACGTTTAATCGCGTCCAGGAGGTGCGGACGCGGAACA
AGCTGGGCCGGAGAAAGGCAACAGGGGGCCTGACGAACGCGTTCTCCATGCTGTTCCGGTGCCCGGTCTGCGGAAGTTGG
CTGGTAAGGGTCAACAAGAACAGTAAGAGCAACTGGCAATACCTCGTGTGCGGTGCCGCAAAAGCTGGCTACCGGGACGC
CGACAGCGGCTACAGGTTGTGCCCAGGTGGCTACAAGGCCGTGCGCTACGACGTGGTAGAGCAGGCGTTTGTCGATGCGG
TCCTGTGCGGTCGCTTTATCTCCTCAACAGGAAGCGCCTTGGAAGCCGTCGAGGCAGCGATAGAGGCGCAGAGAAAGCGC
AGAGAGGAGAGCTTGCGGCGGTCTACGAACCTCACGAACGCGATAGCTGAAGGCGCTCTTAAAGGGAGTTCTCCTGTAAT
CAAAGACCTGGAAAAGTACAGCCTTGAAGTTGTTGGGCCAGCCGATGATGATCTCCAAATAGTGGGCAAGGTGGAGCACT
GGACGGTAGCTGAAGAGCTGGAATTGCTGGCGTCAGCAATAAAAGGGGCAGAGATTGCCATTGAGCGCTTAGAACTTGAC
CGGGAGGCTTTGAAGCCGCGAACCGTAGACATTAAACTAAGGGAATTGAAGATGGCGGTGTGTGGGCCTGAGATTGACCG
CCAGAAGATCAATATGCTGCTCCAGGCCCTGTGTGACTCCAGCGAACTGAATGCTGACACCAAGGAAATGACCTTCAATC
TGAGGCACGCTGACAAGCCGGTGGTTGTAGTATGGTAG

Upstream 100 bases:

>100_bases
TCTTGCCCGATCCTGGCGGGCCGATCATAAGCATGTTATATTCACAAGACCCATGTTACATGCTACAGTGCATCACCAGT
TCACCTTTAGGAGGTCCGTA

Downstream 100 bases:

>100_bases
CGCGTGGCGGCCTTGGACTGGAAGCCAAGACGCTGGAATTATTCTTCAAATGACGCTTGCGGCCACTATCTTAAATCTGT
ATAGTTAGCGCTCAAAAATT

Product: resolvase-like serine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 544

Protein sequence:

>545_residues
MARAFSYLRFSRPEQRKGDSLRRQTEAAREYADRHNLALDDFSFRDLGHSAYRGSHAEIGGLSQFLAAIDTGHVKPGDYL
LIENFDRLSRQVLDEAFDLLRTICNKGISVVTLQDGNIYDKESLSRNFASLMWALFAFARAHDESAVKSDRLLSTWHNKR
KDMRVKPLTGKLPGWLRLSAEKQITVIEDRAEVVKEIFTRYVEGQSPRTIVNRLNQNNVECWGIGKQKSKKWNSSYIQKI
LDNESVIGRFTPHKIMFEGIKKTRVPLETVNDYFPVIIDAETFNRVQEVRTRNKLGRRKATGGLTNAFSMLFRCPVCGSW
LVRVNKNSKSNWQYLVCGAAKAGYRDADSGYRLCPGGYKAVRYDVVEQAFVDAVLCGRFISSTGSALEAVEAAIEAQRKR
REESLRRSTNLTNAIAEGALKGSSPVIKDLEKYSLEVVGPADDDLQIVGKVEHWTVAEELELLASAIKGAEIAIERLELD
REALKPRTVDIKLRELKMAVCGPEIDRQKINMLLQALCDSSELNADTKEMTFNLRHADKPVVVVW

Sequences:

>Translated_545_residues
MARAFSYLRFSRPEQRKGDSLRRQTEAAREYADRHNLALDDFSFRDLGHSAYRGSHAEIGGLSQFLAAIDTGHVKPGDYL
LIENFDRLSRQVLDEAFDLLRTICNKGISVVTLQDGNIYDKESLSRNFASLMWALFAFARAHDESAVKSDRLLSTWHNKR
KDMRVKPLTGKLPGWLRLSAEKQITVIEDRAEVVKEIFTRYVEGQSPRTIVNRLNQNNVECWGIGKQKSKKWNSSYIQKI
LDNESVIGRFTPHKIMFEGIKKTRVPLETVNDYFPVIIDAETFNRVQEVRTRNKLGRRKATGGLTNAFSMLFRCPVCGSW
LVRVNKNSKSNWQYLVCGAAKAGYRDADSGYRLCPGGYKAVRYDVVEQAFVDAVLCGRFISSTGSALEAVEAAIEAQRKR
REESLRRSTNLTNAIAEGALKGSSPVIKDLEKYSLEVVGPADDDLQIVGKVEHWTVAEELELLASAIKGAEIAIERLELD
REALKPRTVDIKLRELKMAVCGPEIDRQKINMLLQALCDSSELNADTKEMTFNLRHADKPVVVVW
>Mature_544_residues
ARAFSYLRFSRPEQRKGDSLRRQTEAAREYADRHNLALDDFSFRDLGHSAYRGSHAEIGGLSQFLAAIDTGHVKPGDYLL
IENFDRLSRQVLDEAFDLLRTICNKGISVVTLQDGNIYDKESLSRNFASLMWALFAFARAHDESAVKSDRLLSTWHNKRK
DMRVKPLTGKLPGWLRLSAEKQITVIEDRAEVVKEIFTRYVEGQSPRTIVNRLNQNNVECWGIGKQKSKKWNSSYIQKIL
DNESVIGRFTPHKIMFEGIKKTRVPLETVNDYFPVIIDAETFNRVQEVRTRNKLGRRKATGGLTNAFSMLFRCPVCGSWL
VRVNKNSKSNWQYLVCGAAKAGYRDADSGYRLCPGGYKAVRYDVVEQAFVDAVLCGRFISSTGSALEAVEAAIEAQRKRR
EESLRRSTNLTNAIAEGALKGSSPVIKDLEKYSLEVVGPADDDLQIVGKVEHWTVAEELELLASAIKGAEIAIERLELDR
EALKPRTVDIKLRELKMAVCGPEIDRQKINMLLQALCDSSELNADTKEMTFNLRHADKPVVVVW

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=343, Percent_Identity=34.402332361516, Blast_Score=182, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 61640; Mature: 61509

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFSYLRFSRPEQRKGDSLRRQTEAAREYADRHNLALDDFSFRDLGHSAYRGSHAEIG
CCCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHCCCCCCCC
GLSQFLAAIDTGHVKPGDYLLIENFDRLSRQVLDEAFDLLRTICNKGISVVTLQDGNIYD
HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
KESLSRNFASLMWALFAFARAHDESAVKSDRLLSTWHNKRKDMRVKPLTGKLPGWLRLSA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECC
EKQITVIEDRAEVVKEIFTRYVEGQSPRTIVNRLNQNNVECWGIGKQKSKKWNSSYIQKI
CCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCHHHHHHH
LDNESVIGRFTPHKIMFEGIKKTRVPLETVNDYFPVIIDAETFNRVQEVRTRNKLGRRKA
HCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCHHC
TGGLTNAFSMLFRCPVCGSWLVRVNKNSKSNWQYLVCGAAKAGYRDADSGYRLCPGGYKA
CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEECCCCHHH
VRYDVVEQAFVDAVLCGRFISSTGSALEAVEAAIEAQRKRREESLRRSTNLTNAIAEGAL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
KGSSPVIKDLEKYSLEVVGPADDDLQIVGKVEHWTVAEELELLASAIKGAEIAIERLELD
CCCCHHHHHHHHCCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
REALKPRTVDIKLRELKMAVCGPEIDRQKINMLLQALCDSSELNADTKEMTFNLRHADKP
HHHCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHEEEEEECCCC
VVVVW
EEEEC
>Mature Secondary Structure 
ARAFSYLRFSRPEQRKGDSLRRQTEAAREYADRHNLALDDFSFRDLGHSAYRGSHAEIG
CCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHCCCCCCCC
GLSQFLAAIDTGHVKPGDYLLIENFDRLSRQVLDEAFDLLRTICNKGISVVTLQDGNIYD
HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
KESLSRNFASLMWALFAFARAHDESAVKSDRLLSTWHNKRKDMRVKPLTGKLPGWLRLSA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECC
EKQITVIEDRAEVVKEIFTRYVEGQSPRTIVNRLNQNNVECWGIGKQKSKKWNSSYIQKI
CCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCHHHHHHH
LDNESVIGRFTPHKIMFEGIKKTRVPLETVNDYFPVIIDAETFNRVQEVRTRNKLGRRKA
HCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCHHC
TGGLTNAFSMLFRCPVCGSWLVRVNKNSKSNWQYLVCGAAKAGYRDADSGYRLCPGGYKA
CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEECCCCHHH
VRYDVVEQAFVDAVLCGRFISSTGSALEAVEAAIEAQRKRREESLRRSTNLTNAIAEGAL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
KGSSPVIKDLEKYSLEVVGPADDDLQIVGKVEHWTVAEELELLASAIKGAEIAIERLELD
CCCCHHHHHHHHCCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
REALKPRTVDIKLRELKMAVCGPEIDRQKINMLLQALCDSSELNADTKEMTFNLRHADKP
HHHCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHEEEEEECCCC
VVVVW
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]