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The map label for this gene is nth

Identifier: 197119883

GI number: 197119883

Start: 4030350

End: 4031036

Strand: Direct

Name: nth

Synonym: Gbem_3521

Alternate gene names: NA

Gene position: 4030350-4031036 (Clockwise)

Preceding gene: 197119882

Following gene: 197119884

Centisome position: 87.33

GC content: 62.88

Gene sequence:

>687_bases
GTGAAAGACACGCTGGACAAAGAACAGACGCGGGCGGCGCTTCTGGAACTCTTCGAGACGCTCTTAAGCCGCTACGGCGC
GCTTAACTGGTGGCCCGCCGACACCCCCTTCGAGGTCTGCGTCGGCGCCATCCTGACCCAGAACACCAACTGGCTCAACG
TTGAAAAGGCAATAGTAAACCTGAAACGAGAGGGGCTCCTCTCGGCAGAGGCGCTCCGGGAGATCGATGAGGGGCGGCTG
GCCGAGTTGATACGCCCCTCTGGCTTTTTCAACGTGAAGAGCGCGAGGCTGAAAGGGTTTGTCGGCTGGCTTTTCGAGCG
CTACGGCTCCCTGGACGCCATGTTCCAGGGGGACTGGATCGGCCTTCGGGAGGAACTGTCCGCGGTGCGCGGCATCGGGC
CCGAGACCTGCGACTCGATCCTTCTCTACGCGGGGGGAAAGCCTTCCTTCGTGGTCGACGCCTATACCAGGCGTCTCTTC
TCAAGGCTCGGGCTCATGCGGGAAGAGGACGACTACCACCGGGTGCGCGCCCTTTTCATGGATCATCTTCCGGCCGAGGT
GCCCCTATTCAACGAGTACCACGCCCTGATCGTCGAGCAGTGCAAGCGGCACTGCCGCAAGAAGCCGCTGTGCGACGGCT
GCCCGCTCACCCGCTTTTGCACCTTCCTCGCGGCAGGCCGCCCTTGA

Upstream 100 bases:

>100_bases
CCGCTCCGCCGGGAACTACGTCAGGTACTCCCGCGAGTACATGGAAGATATCGGCTAGGCGCGGCGCCACCAGCCTCCCC
GGCCAAGCAGCAAGGAATCT

Downstream 100 bases:

>100_bases
CCCTGACCCTGACCCTGACCCTGACCCTTACCCAGCACCCACAGGACCTATAGATGAGATTCTTCGCCAACCTGTTCCTG
CTCCTGTTCATCGCCGACGG

Product: endonuclease III-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKDTLDKEQTRAALLELFETLLSRYGALNWWPADTPFEVCVGAILTQNTNWLNVEKAIVNLKREGLLSAEALREIDEGRL
AELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWIGLREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLF
SRLGLMREEDDYHRVRALFMDHLPAEVPLFNEYHALIVEQCKRHCRKKPLCDGCPLTRFCTFLAAGRP

Sequences:

>Translated_228_residues
MKDTLDKEQTRAALLELFETLLSRYGALNWWPADTPFEVCVGAILTQNTNWLNVEKAIVNLKREGLLSAEALREIDEGRL
AELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWIGLREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLF
SRLGLMREEDDYHRVRALFMDHLPAEVPLFNEYHALIVEQCKRHCRKKPLCDGCPLTRFCTFLAAGRP
>Mature_228_residues
MKDTLDKEQTRAALLELFETLLSRYGALNWWPADTPFEVCVGAILTQNTNWLNVEKAIVNLKREGLLSAEALREIDEGRL
AELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWIGLREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLF
SRLGLMREEDDYHRVRALFMDHLPAEVPLFNEYHALIVEQCKRHCRKKPLCDGCPLTRFCTFLAAGRP

Specific function: Unknown

COG id: COG2231

COG function: function code L; Uncharacterized protein related to Endonuclease III

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: 4.2.99.18

Molecular weight: Translated: 25990; Mature: 25990

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTLDKEQTRAALLELFETLLSRYGALNWWPADTPFEVCVGAILTQNTNWLNVEKAIVN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
LKREGLLSAEALREIDEGRLAELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWI
HHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCC
GLREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLFSRLGLMREEDDYHRVRALFM
CHHHHHHHHHCCCHHHHHHEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DHLPAEVPLFNEYHALIVEQCKRHCRKKPLCDGCPLTRFCTFLAAGRP
HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKDTLDKEQTRAALLELFETLLSRYGALNWWPADTPFEVCVGAILTQNTNWLNVEKAIVN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
LKREGLLSAEALREIDEGRLAELIRPSGFFNVKSARLKGFVGWLFERYGSLDAMFQGDWI
HHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCC
GLREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLFSRLGLMREEDDYHRVRALFM
CHHHHHHHHHCCCHHHHHHEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DHLPAEVPLFNEYHALIVEQCKRHCRKKPLCDGCPLTRFCTFLAAGRP
HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]