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The map label for this gene is yrdA [H]

Identifier: 197119882

GI number: 197119882

Start: 4029774

End: 4030307

Strand: Direct

Name: yrdA [H]

Synonym: Gbem_3520

Alternate gene names: 197119882

Gene position: 4029774-4030307 (Clockwise)

Preceding gene: 197119881

Following gene: 197119883

Centisome position: 87.32

GC content: 64.04

Gene sequence:

>534_bases
ATGATCCGACCGTTCAAGGGTATCGCCCCCAAGATAGATCCCTCCGCGTTCATAGCCGAAACCGCCGTCATCATAGGCGA
GGTCAGCATCGGCAGGGAAGCCAGCATCTGGTACAACTGCGTGGTCCGCGGGGACGTCAACTTCATCAGCATCGGGGACC
GGACCAACATACAGGACCTCTCCATGCTGCACGTGACCCACAAGAAGAACCCGGAGGACCCCGGGGCGCCGCTCATCATC
GGCAACGACGTCACCGTCGGCCACAGCGTGACCCTGCACGGCTGCACCATCGAGGACGGCGCCTTCGTGGGGATGCAGGC
GATCATCATGGACAAGGTCTTGGTCGGCAAGGGGGCCCTGGTCGGCGCGCGCGCCCTGGTTACCGAGGGGACCGTCATCC
CCCCCGGCACCCTCTGGGTCGGGTCCCCAGCGAAGTACAAGCGGGACTTAACCGAGAGCGAGATCGCCTGGCTCGCCCGC
TCCGCCGGGAACTACGTCAGGTACTCCCGCGAGTACATGGAAGATATCGGCTAG

Upstream 100 bases:

>100_bases
CATCCCCGCCAAGCGCGCACTGGACCGGATGCTCGCCATCCCGAGAGATTAGCCGGCAGCCCCAGAGCACCAGACTTCCC
ATAAACGACAGGAGCCCCAT

Downstream 100 bases:

>100_bases
GCGCGGCGCCACCAGCCTCCCCGGCCAAGCAGCAAGGAATCTGTGAAAGACACGCTGGACAAAGAACAGACGCGGGCGGC
GCTTCTGGAACTCTTCGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIRPFKGIAPKIDPSAFIAETAVIIGEVSIGREASIWYNCVVRGDVNFISIGDRTNIQDLSMLHVTHKKNPEDPGAPLII
GNDVTVGHSVTLHGCTIEDGAFVGMQAIIMDKVLVGKGALVGARALVTEGTVIPPGTLWVGSPAKYKRDLTESEIAWLAR
SAGNYVRYSREYMEDIG

Sequences:

>Translated_177_residues
MIRPFKGIAPKIDPSAFIAETAVIIGEVSIGREASIWYNCVVRGDVNFISIGDRTNIQDLSMLHVTHKKNPEDPGAPLII
GNDVTVGHSVTLHGCTIEDGAFVGMQAIIMDKVLVGKGALVGARALVTEGTVIPPGTLWVGSPAKYKRDLTESEIAWLAR
SAGNYVRYSREYMEDIG
>Mature_177_residues
MIRPFKGIAPKIDPSAFIAETAVIIGEVSIGREASIWYNCVVRGDVNFISIGDRTNIQDLSMLHVTHKKNPEDPGAPLII
GNDVTVGHSVTLHGCTIEDGAFVGMQAIIMDKVLVGKGALVGARALVTEGTVIPPGTLWVGSPAKYKRDLTESEIAWLAR
SAGNYVRYSREYMEDIG

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=174, Percent_Identity=44.8275862068966, Blast_Score=160, Evalue=5e-41,
Organism=Escherichia coli, GI1787667, Length=164, Percent_Identity=37.1951219512195, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87081681, Length=161, Percent_Identity=31.055900621118, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19079; Mature: 19079

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPFKGIAPKIDPSAFIAETAVIIGEVSIGREASIWYNCVVRGDVNFISIGDRTNIQDL
CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCCCE
SMLHVTHKKNPEDPGAPLIIGNDVTVGHSVTLHGCTIEDGAFVGMQAIIMDKVLVGKGAL
EEEEEECCCCCCCCCCCEEECCCEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCE
VGARALVTEGTVIPPGTLWVGSPAKYKRDLTESEIAWLARSAGNYVRYSREYMEDIG
ECCEEEEECCCCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIRPFKGIAPKIDPSAFIAETAVIIGEVSIGREASIWYNCVVRGDVNFISIGDRTNIQDL
CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCCCE
SMLHVTHKKNPEDPGAPLIIGNDVTVGHSVTLHGCTIEDGAFVGMQAIIMDKVLVGKGAL
EEEEEECCCCCCCCCCCEEECCCEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCE
VGARALVTEGTVIPPGTLWVGSPAKYKRDLTESEIAWLARSAGNYVRYSREYMEDIG
ECCEEEEECCCCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]