| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119771
Identifier: 197119771
GI number: 197119771
Start: 3926017
End: 3926910
Strand: Direct
Name: 197119771
Synonym: Gbem_3409
Alternate gene names: NA
Gene position: 3926017-3926910 (Clockwise)
Preceding gene: 197119770
Following gene: 197119779
Centisome position: 85.07
GC content: 64.65
Gene sequence:
>894_bases ATGCTTCGCAAACTGTTTTTCCTACTGCTGGTCCCCTTGCTCTTCCCGATAGTAGCCGCGGCACAGACGCCGGCGCCCCA AAAGCCGGCAGCTGTGACCCTCTTCCCCTTGAGCGTCCTTTCCATCATCCCGGCACAAGGCGAACCCGGCACCGCCGTCA CCCTGAACGGCACCGGCTTCACCACGGGGACAGCCGTGTTCCTCGGGACCCGGCAGCTCCCGGCGACGCTGGTGGGAAAC CGGCTGCTGACCGTAGAGCTTCCCGACCTCCCCCCCGGCGTCTACGCGCTCTACCTGAAGCGGGAGGACGGCAGCACCAG CAGGGCTTTCAACTTCGCGTTGCAGCCGCAAAAACCGGTCGCGACATCCCTCTCCCCCGACACGGTGACCGCCTGCTCCA CCGGCAGGGAGCGCGAGGTAGCGGTAGCCGGCGCCAAATTCCAGCCAGGAGCCCGCGTCTTTTTGGACGGCGCCGCTCTC ACCACCCGCTTCATTTCCCCGGCCGCGCTCTCCTTCACCGCCCCGGCGGTCGGCGCCGGCCTGCACCAGGTGCAGGTAAA GAACCCTTCCGACGCGGGTTCCGGGGTACTGGCGCTTTTCATCGACGCGAAGCCGGAGATAGCGAGCGTCACCATCGGCC GGGAGTTCGTTAGCGCTTACGAGTTGGTCCTAACGGGGAAGAATTTCCAGCAGAGTTCGGTGCTGGTAGCGGACGGGAAA AGGGTCGGGACGGGAGAGCAGATAGCGACCGAGCGGGAGCGGCTGATTTATTTGGGTTGCAACCAGCTGGTCTACGAGCG CCACCCCTACGACCCGACCCCAAAAGAGATCCGGCTGCAGGTAGTAAATCAAAACGGGGAGGAGAGCGCCCTGTTCACCA TCAGCGCCCCCTGA
Upstream 100 bases:
>100_bases TTCTTCGTGGCGGGTGCGTGGCTGTCGCTGACGATTGACAACTGACAAGCGGGAATCGACAATGTTTGGGTGTAGTTAGA TCGACTCAATGGAGGGTCGC
Downstream 100 bases:
>100_bases CCCCGTACTAGCGCAGCGACTCCTCCAGCACCACGAGATAGCCGTCGGGGTCGAAGCACCAGAGTTCCTTGGTGCCATAT GGCTTTTGCTGCAAGGGGTA
Product: IPT/TIG domain-containing protein
Products: NA
Alternate protein names: Cell Surface Receptor IPT/TIG; IPT/TIG Domain Protein
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MLRKLFFLLLVPLLFPIVAAAQTPAPQKPAAVTLFPLSVLSIIPAQGEPGTAVTLNGTGFTTGTAVFLGTRQLPATLVGN RLLTVELPDLPPGVYALYLKREDGSTSRAFNFALQPQKPVATSLSPDTVTACSTGREREVAVAGAKFQPGARVFLDGAAL TTRFISPAALSFTAPAVGAGLHQVQVKNPSDAGSGVLALFIDAKPEIASVTIGREFVSAYELVLTGKNFQQSSVLVADGK RVGTGEQIATERERLIYLGCNQLVYERHPYDPTPKEIRLQVVNQNGEESALFTISAP
Sequences:
>Translated_297_residues MLRKLFFLLLVPLLFPIVAAAQTPAPQKPAAVTLFPLSVLSIIPAQGEPGTAVTLNGTGFTTGTAVFLGTRQLPATLVGN RLLTVELPDLPPGVYALYLKREDGSTSRAFNFALQPQKPVATSLSPDTVTACSTGREREVAVAGAKFQPGARVFLDGAAL TTRFISPAALSFTAPAVGAGLHQVQVKNPSDAGSGVLALFIDAKPEIASVTIGREFVSAYELVLTGKNFQQSSVLVADGK RVGTGEQIATERERLIYLGCNQLVYERHPYDPTPKEIRLQVVNQNGEESALFTISAP >Mature_297_residues MLRKLFFLLLVPLLFPIVAAAQTPAPQKPAAVTLFPLSVLSIIPAQGEPGTAVTLNGTGFTTGTAVFLGTRQLPATLVGN RLLTVELPDLPPGVYALYLKREDGSTSRAFNFALQPQKPVATSLSPDTVTACSTGREREVAVAGAKFQPGARVFLDGAAL TTRFISPAALSFTAPAVGAGLHQVQVKNPSDAGSGVLALFIDAKPEIASVTIGREFVSAYELVLTGKNFQQSSVLVADGK RVGTGEQIATERERLIYLGCNQLVYERHPYDPTPKEIRLQVVNQNGEESALFTISAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31472; Mature: 31472
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRKLFFLLLVPLLFPIVAAAQTPAPQKPAAVTLFPLSVLSIIPAQGEPGTAVTLNGTGF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCEEEECCCCC TTGTAVFLGTRQLPATLVGNRLLTVELPDLPPGVYALYLKREDGSTSRAFNFALQPQKPV CCCEEEEEECCCCCHHHHCCEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC ATSLSPDTVTACSTGREREVAVAGAKFQPGARVFLDGAALTTRFISPAALSFTAPAVGAG CCCCCCCCEEEECCCCCCEEEEECCCCCCCCEEEECCHHHHHHHCCCCCEEEECCHHCCC LHQVQVKNPSDAGSGVLALFIDAKPEIASVTIGREFVSAYELVLTGKNFQQSSVLVADGK EEEEEECCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHEEEEEECCCCCCCEEEEECCC RVGTGEQIATERERLIYLGCNQLVYERHPYDPTPKEIRLQVVNQNGEESALFTISAP CCCCCHHHHCCCCEEEEEECCHHEEECCCCCCCHHHEEEEEECCCCCCCEEEEEECC >Mature Secondary Structure MLRKLFFLLLVPLLFPIVAAAQTPAPQKPAAVTLFPLSVLSIIPAQGEPGTAVTLNGTGF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCEEEECCCCC TTGTAVFLGTRQLPATLVGNRLLTVELPDLPPGVYALYLKREDGSTSRAFNFALQPQKPV CCCEEEEEECCCCCHHHHCCEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC ATSLSPDTVTACSTGREREVAVAGAKFQPGARVFLDGAALTTRFISPAALSFTAPAVGAG CCCCCCCCEEEECCCCCCEEEEECCCCCCCCEEEECCHHHHHHHCCCCCEEEECCHHCCC LHQVQVKNPSDAGSGVLALFIDAKPEIASVTIGREFVSAYELVLTGKNFQQSSVLVADGK EEEEEECCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHEEEEEECCCCCCCEEEEECCC RVGTGEQIATERERLIYLGCNQLVYERHPYDPTPKEIRLQVVNQNGEESALFTISAP CCCCCHHHHCCCCEEEEEECCHHEEECCCCCCCHHHEEEEEECCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA