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The map label for this gene is yhcC [C]

Identifier: 197119751

GI number: 197119751

Start: 3894104

End: 3895777

Strand: Direct

Name: yhcC [C]

Synonym: Gbem_3387

Alternate gene names: 197119751

Gene position: 3894104-3895777 (Clockwise)

Preceding gene: 197119749

Following gene: 197119752

Centisome position: 84.38

GC content: 60.81

Gene sequence:

>1674_bases
ATGAAGATCCTGCTTTCCACGCTGCACGCAAAGTACGTCCATGCCTCACTGGCCCTTCCCTATCTCGCCTCAGCCTGCGC
CGACTTGCCCGGGTTGGAGTTCCGCATCCTGGAACTGACGGTGAACGAGCAGCAGGACCAACTCCTCGGCAAACTGTTCG
CCGAGGCGCCGGACGTCCTGCTCTTCTCCTGCTACATCTGGAATACCGATCTCACCCTGAAGATTGCCTCCGACCTGAAG
CAGCTCCTTCCCGGCACCTTCATCGTCCTTGGCGGCCCGGAGGTCTCATACGGATCTTTCGAAATGATGGGGCGAAACGC
CGCCATCGACTGCATCGTGCGGGGAGAGGGAGAGGAGACCTGCCGGGAGTTGCTGCAGGCCCTGGCAGGCGGAGTCCCCC
TCGACGATATACCTGGCATCACCTACCGGGACCACGACGAGGTCGTCGCCAATCCGGAGCGCGGAGCGATAACAAAGCTG
GACAGCATTCCCTCCCCCTTTGCCGCAGGCCTGGTGGACCTCGACAAGCCGCTTGTCTACTACGAGACTTCCCGCGGCTG
CCCCTTCTCCTGCGCCTTCTGCATGTCCTCTCTGGAAAACGGCGTCCGCTCCTTTTCCATGGAACGGATCGAAGCCGACC
TGCGCCTGCTCATGGATAGGGGAGTAAAGACCGTGAAGCTGGCGGACCGGACCTTCAACTTCGACACACAAAGGGCCAAC
GCCATCTGGCGCTTGATCCTGACGGAGAACAAGTCGAGCAAGTTCCACTTCGAGATTGCCGCCGAGCTTCTTACCGAGGA
GAACCTGGCGCTGCTTGCGGAGGTCCCGGCCGGGATGTTCCGCTTCGAGATCGGCGTCCAGTCAGGCGGCGAAAAGACGC
TCGCCAAGGTGCAGCGGAAGTCGAGCCTGGACAAGCTGTATCAAAATGTGAGGGCAGTCATTGAGAGGACCAAGGTGACG
GTCCACCTGGATCTTGTCGCGGGTCTTCCCGGGGAATCGCTGGAGGGTTTCCTGGCTTCACTGCAGGGGCTTTTCGAGCT
GGGGGGAAATCACATCCAAGTCGAACCGCTCAAGGTTCTAAAGGGGACCGCCATGCGCGGCATCGCCCGCAAGGAAGGTT
ACGCCTATGCCGAAGCGGCGCCCTACAAGGTGCTGCAGACCCCTTGGCTCAGCTTCCCGGACCTCCGCCGCATAGAGACC
ATCAGCCGTCTCCTGGACCTCATTTACAACAGCGGCAGGTTTGCCGCCTCGCTGCGGCAGCTCGGCAACGGCAAGGAACT
GGCGCAGGTCTTCGCCGATGCCGCCGACTTCTTCGAAAGCGAAGGTCTCATGGCCAATGTCTCGCTGCAACTTTTGTTCG
AATCCGTATGGCGTTTTGCCTGCAGCCGGCTTGCGGGAGAAGAGTTGGAGCTGTTCCGTGACGCCCTTTGCTTCGACCAC
TGCATGACCGGCTATCCCGGTGGCCAGTGTCCCAGTTTCTTCACAGCCAACGTCGAAAAGAGCGAGCAAGGAGCGCCAGC
CGGGCTCGCCGCCAAGCCCGCCGAACGAGTCAGGTACTACCGGCGCAGGTTCGCCAGGGATTATCGCAGCATCCCTTGGG
GCAAAGCCGCGGTAGAGCTCACCTTCATCTATCGCTCAGCCCCCGGAGAAGGATTGAAGGTCGAGATTCTGTAG

Upstream 100 bases:

>100_bases
AGTAGCAAAAAACGCCTATCCCGGCAAGAAGAAGGGGGCGCCGCTTTTCTCTTCGTACTTTCCGTGGCAAATATCTCCAG
TATCGGCTACAATCCCGCCC

Downstream 100 bases:

>100_bases
TTGCAGCAGCCAGCCCAGCCCAGCCCCCGGTTTCTCCCCTTGCACTCTTGCCCCACAAGGCAATACTGGAAGCTTAATTT
TTTCCAACACACTGCTCAAG

Product: cobalamin-binding radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MKILLSTLHAKYVHASLALPYLASACADLPGLEFRILELTVNEQQDQLLGKLFAEAPDVLLFSCYIWNTDLTLKIASDLK
QLLPGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEETCRELLQALAGGVPLDDIPGITYRDHDEVVANPERGAITKL
DSIPSPFAAGLVDLDKPLVYYETSRGCPFSCAFCMSSLENGVRSFSMERIEADLRLLMDRGVKTVKLADRTFNFDTQRAN
AIWRLILTENKSSKFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRKSSLDKLYQNVRAVIERTKVT
VHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVLKGTAMRGIARKEGYAYAEAAPYKVLQTPWLSFPDLRRIET
ISRLLDLIYNSGRFAASLRQLGNGKELAQVFADAADFFESEGLMANVSLQLLFESVWRFACSRLAGEELELFRDALCFDH
CMTGYPGGQCPSFFTANVEKSEQGAPAGLAAKPAERVRYYRRRFARDYRSIPWGKAAVELTFIYRSAPGEGLKVEIL

Sequences:

>Translated_557_residues
MKILLSTLHAKYVHASLALPYLASACADLPGLEFRILELTVNEQQDQLLGKLFAEAPDVLLFSCYIWNTDLTLKIASDLK
QLLPGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEETCRELLQALAGGVPLDDIPGITYRDHDEVVANPERGAITKL
DSIPSPFAAGLVDLDKPLVYYETSRGCPFSCAFCMSSLENGVRSFSMERIEADLRLLMDRGVKTVKLADRTFNFDTQRAN
AIWRLILTENKSSKFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRKSSLDKLYQNVRAVIERTKVT
VHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVLKGTAMRGIARKEGYAYAEAAPYKVLQTPWLSFPDLRRIET
ISRLLDLIYNSGRFAASLRQLGNGKELAQVFADAADFFESEGLMANVSLQLLFESVWRFACSRLAGEELELFRDALCFDH
CMTGYPGGQCPSFFTANVEKSEQGAPAGLAAKPAERVRYYRRRFARDYRSIPWGKAAVELTFIYRSAPGEGLKVEIL
>Mature_557_residues
MKILLSTLHAKYVHASLALPYLASACADLPGLEFRILELTVNEQQDQLLGKLFAEAPDVLLFSCYIWNTDLTLKIASDLK
QLLPGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEETCRELLQALAGGVPLDDIPGITYRDHDEVVANPERGAITKL
DSIPSPFAAGLVDLDKPLVYYETSRGCPFSCAFCMSSLENGVRSFSMERIEADLRLLMDRGVKTVKLADRTFNFDTQRAN
AIWRLILTENKSSKFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRKSSLDKLYQNVRAVIERTKVT
VHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVLKGTAMRGIARKEGYAYAEAAPYKVLQTPWLSFPDLRRIET
ISRLLDLIYNSGRFAASLRQLGNGKELAQVFADAADFFESEGLMANVSLQLLFESVWRFACSRLAGEELELFRDALCFDH
CMTGYPGGQCPSFFTANVEKSEQGAPAGLAAKPAERVRYYRRRFARDYRSIPWGKAAVELTFIYRSAPGEGLKVEIL

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 61675; Mature: 61675

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLSTLHAKYVHASLALPYLASACADLPGLEFRILELTVNEQQDQLLGKLFAEAPDVL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCEE
LFSCYIWNTDLTLKIASDLKQLLPGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEET
EEEEEEECCCEEEEHHHHHHHHCCCEEEEECCCCCCCCCHHCCCCCCEEEEEEECCCHHH
CRELLQALAGGVPLDDIPGITYRDHDEVVANPERGAITKLDSIPSPFAAGLVDLDKPLVY
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCEEE
YETSRGCPFSCAFCMSSLENGVRSFSMERIEADLRLLMDRGVKTVKLADRTFNFDTQRAN
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC
AIWRLILTENKSSKFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRK
EEEEEEEECCCCCCEEHHHHHHHHCCCCHHEEECCCCCEEEEEEECCCCCHHHHHHHHHH
SSLDKLYQNVRAVIERTKVTVHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVL
HHHHHHHHHHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHH
KGTAMRGIARKEGYAYAEAAPYKVLQTPWLSFPDLRRIETISRLLDLIYNSGRFAASLRQ
HHHHHHHHHHHCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
LGNGKELAQVFADAADFFESEGLMANVSLQLLFESVWRFACSRLAGEELELFRDALCFDH
CCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CMTGYPGGQCPSFFTANVEKSEQGAPAGLAAKPAERVRYYRRRFARDYRSIPWGKAAVEL
HHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
TFIYRSAPGEGLKVEIL
EEEEECCCCCCCEEEEC
>Mature Secondary Structure
MKILLSTLHAKYVHASLALPYLASACADLPGLEFRILELTVNEQQDQLLGKLFAEAPDVL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCEE
LFSCYIWNTDLTLKIASDLKQLLPGTFIVLGGPEVSYGSFEMMGRNAAIDCIVRGEGEET
EEEEEEECCCEEEEHHHHHHHHCCCEEEEECCCCCCCCCHHCCCCCCEEEEEEECCCHHH
CRELLQALAGGVPLDDIPGITYRDHDEVVANPERGAITKLDSIPSPFAAGLVDLDKPLVY
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCEEE
YETSRGCPFSCAFCMSSLENGVRSFSMERIEADLRLLMDRGVKTVKLADRTFNFDTQRAN
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC
AIWRLILTENKSSKFHFEIAAELLTEENLALLAEVPAGMFRFEIGVQSGGEKTLAKVQRK
EEEEEEEECCCCCCEEHHHHHHHHCCCCHHEEECCCCCEEEEEEECCCCCHHHHHHHHHH
SSLDKLYQNVRAVIERTKVTVHLDLVAGLPGESLEGFLASLQGLFELGGNHIQVEPLKVL
HHHHHHHHHHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHH
KGTAMRGIARKEGYAYAEAAPYKVLQTPWLSFPDLRRIETISRLLDLIYNSGRFAASLRQ
HHHHHHHHHHHCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
LGNGKELAQVFADAADFFESEGLMANVSLQLLFESVWRFACSRLAGEELELFRDALCFDH
CCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CMTGYPGGQCPSFFTANVEKSEQGAPAGLAAKPAERVRYYRRRFARDYRSIPWGKAAVEL
HHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
TFIYRSAPGEGLKVEIL
EEEEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]