| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119735
Identifier: 197119735
GI number: 197119735
Start: 3873329
End: 3876016
Strand: Direct
Name: 197119735
Synonym: Gbem_3371
Alternate gene names: NA
Gene position: 3873329-3876016 (Clockwise)
Preceding gene: 197119731
Following gene: 197119736
Centisome position: 83.93
GC content: 63.39
Gene sequence:
>2688_bases ATGCAAGGCACGCTATGGAAAAAGTTTTCAACTTTCTTGATTGCCTCAACTGCTGCAGCCGCACTGTTTCTGGGCGGCTG CGAAGGGGACAAGGGTGATCGGGGTGAACCTGGCAAGAACGCCACCTCATTCACCAATATAAGCTCCCTTACCCCGCAAC AGCAGGCAAATCTCACCTTCGACCAGACCAACAGCACGGTTACCAGCGTCTCCATCAGCAGTCCGCCGGTCGTCAAGTTC AAGATCCTCGACAGCAACGGCAACCCCGTGATCGGCATCGGCGCCAGGAACTCGACTGGGCAGCTGCAAAACCTCGGCTT CACCCTCGCGAAACTCGTTCCCGGCACCAACGGCAGCCCGTCTCACTGGGTGAACTACTTAGTGACCACCGTTCCTGCCC CGGGCTCCAGCACACCGGCTGCAGCCAGGCCACCCGAGCGCGACCGTGAGGGGACCTTGATAGACAACGGCGATGGCACC TACCAGTACACCTTCGCCCGCGACATCACCCAGATCCAGACCCAGGTGAACGCCATGACCTTCACCGGCAACAACCGCAG AAGCGACCTGGGCGATTTGACCTATCAGCCGAGCCTTACCCACCGCCTGGTGATCCAGTACGGCGGGACCATCCTGAACA CCTCCCCGTCGATTCCCTTCAAAAATGCACTCAACATCGTCTACGATTTCATCCCGGCTACCGGCCAAGTGGTGACCTCC TCGACCTCTAACGCACAGGAGCGCAACATCGTGTTCACCAAGTATTGCAACGAGTGTCACGGAAGCCCAGGCGATCCCAA TAACCTCAACGACCTGGGCTTCGGCTTGGGCATCACCACGCCTCATTCCGGCCGCGTCGACACCCGCTACTGCGCGATCT GCCATACGAGCCAGCGTGCCTACGGACACGCCATCTCCGTGGCCACCAACGGCGCCTTCACCGACGGCACTTTCGTCACG GCCGAAACCACCACCGCGGACGTGAATACCGACGACGTGCAGGTGTTGGGCGAGTTCGTGACCATGGTGCACAAGATCCA CATGGGGAACAGACTGACCGAAACCGGCTACAACTACGCCGGTGTCACGTTCAACACCATTGCCTACAGCCAGGATCCCG CCCTTTGCCGCAAGTGCCACAGGGGCGACACGCCGCAGCAACTGGCGGTCACGCCGCAGGGTAACAACTGGAACACCATG CCCAGCCGCAAGGCCTGCGGCTCCTGCCACGACAACGTCCACTTCTCGACCGGCCTAAACCACGACGGCAATCTGCCACA GGCGAACGACACGGCCTGCACCGGCTGCCATACCCCGACGGCTATCCAGACTTCGCACGCAAGGGCGCTCGCCAGCCCAC TCAACCCGCAGCCGATCGCAGGGCTGACCAACTTCGAATACCAGCTGCAGAGCGCGACCATCAACGGGACCAGCAACGAC TTGACCATCGTCTTCCGCATCCTTGGCAATGGCACCCCCATCACGCTGGCCACAGCCGCGCCCGGCCTCACCGCGCCGCT TGCCGGCTTCACCGGCAGCCCGTCCTTCCTGCTGGCCTACGCAAGCCCTCAGTTGGAGACCGGCACAGCAGTTCCGGCCG ATTACAACAACCTCGGCAAAGCGGAGGCGCAACCTGCCTTGGTATCCATCGCCGCGCTGCTCAATACGACGACTAACGCA GCTGTTGGCAGCATCGCTGGCCCGGACAGCAACGGCTTCTACACGGCGACCATCAAATCAGCGGCAGCCTTCCCGGTAGG GGCGAGTATGCGCGCAGTCGGGATGCAGAGCTACTTCACCCAGACCGGTTTTGACGCCTCGATCGCCGGCCGCCACACCA AGGCGGTCATCATACCTGTCACGGGCGACACAGCGCGCCGCACGGTAGTCGATCCCGACAAGTGCGCCAGGTGCCACGAG TTCTTCGAAGCCCACGGCGGGCAGCGGGTGTACCAGACCCAGCTCTGCGTAACCTGCCATAACCCCAACCTGAGCACCAG CGGCCGTGCCATCTCCGACGCCAAGCTCGCCGGCTTTGCCTTCACGCCGATCCAGCTCGGCATCCTTACCACCTGGGACC CGGCCTTCAACAAGGCCACCCCTGGATACGCCCTCAGCTTCGCTGAGTTCTCCAACAACTTCAAGGACTTGATCCACGGC ATCCATGCCGGGAGCGCGGCAGAGGGCGGTATCCGCACCAACCCCATCCGCGACGTACGTAACGGCCCGGGCACCAACAT CACCCTCATCGCCGGCGAAGAGATCACCTTCCCGAATCTGCTCTCCAACTGCGACGCCTGCCACCTGAGCGCCCCCGCCG GCACCAACCGCCAGACCTACAAGGCGAACCTGCCGCCCAACGTGCTGCCGTCGACCCAGGTGACTAGGAACGCCGCCGTC GTGGCCGGCGCGACCACCGCCAACATCACCGCGGCACGCACCACGGTCCCCAACCCCGAGGACCTGGTGGTGGCCCCCAT CACCGCCTCCTGCGTCAGCTGCCACGACAGCGCACTGGCCAAGGCGCACATGCAGGCCAACGGCGCGCAGCTTGGCGCCG CCCTGGCAGGGCCGTCCTACACCAACATGGGCGTCCCGCGCTCGACCCTGCCGTCCGCAACCGAGCAATGCGCGCTCTGC CACGGCGAAGGGCGGGTAGCCGACGTCGTAGTGGTTCACCAGAGGTAA
Upstream 100 bases:
>100_bases AGGTCCCCCCCTGAAGCAGCGCTCGCTACGGCTCTCTCTTCCCAGTTCAGCAGCAGCCTTAATGGCAACACAGGCATCTG ACCAGAGACAAGGAGGATTT
Downstream 100 bases:
>100_bases CAATAAGCGCCACAACCAGCCGGGGCACGATAACCGTGCCCCGGCCCATCGCTCCTCGAAAACACCTGCAGAACCGGGGG CCCATCTGCCCCCGGTTTTA
Product: lipoprotein cytochrome c
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 895; Mature: 895
Protein sequence:
>895_residues MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC HGEGRVADVVVVHQR
Sequences:
>Translated_895_residues MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC HGEGRVADVVVVHQR >Mature_895_residues MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC HGEGRVADVVVVHQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93998; Mature: 93998
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTF CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE DQTNSTVTSVSISSPPVVKFKILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSP ECCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCHHHCCEEEEHHCCCCCCCH SHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGTYQYTFARDITQIQTQVNAMT HHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHEEEEE FTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS EECCCCCCCCCCEEECCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRA CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHCCCCEECCCCCCCCCCEEEEEEECCCCC YGHAISVATNGAFTDGTFVTAETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYA CCEEEEEEECCCCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC GVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTMPSRKACGSCHDNVHFSTGLN CEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCC HDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCC LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGK EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC AEAQPALVSIAALLNTTTNAAVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFT CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH QTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHEFFEAHGGQRVYQTQLCVTCH HCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEC NPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG CCCCCCCCCEECCCEECCEEECCEEEEEEEECCCCCCCCCCCCEEEHHHHHCCHHHHHHH IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTY HCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCEE KANLPPNVLPSTQVTRNAAVVAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALA ECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH KAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALCHGEGRVADVVVVHQR HHHHHCCCHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEEEEEECC >Mature Secondary Structure MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTF CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE DQTNSTVTSVSISSPPVVKFKILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSP ECCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCHHHCCEEEEHHCCCCCCCH SHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGTYQYTFARDITQIQTQVNAMT HHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHEEEEE FTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS EECCCCCCCCCCEEECCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRA CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHCCCCEECCCCCCCCCCEEEEEEECCCCC YGHAISVATNGAFTDGTFVTAETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYA CCEEEEEEECCCCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC GVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTMPSRKACGSCHDNVHFSTGLN CEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCC HDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCC LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGK EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC AEAQPALVSIAALLNTTTNAAVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFT CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH QTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHEFFEAHGGQRVYQTQLCVTCH HCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEC NPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG CCCCCCCCCEECCCEECCEEECCEEEEEEEECCCCCCCCCCCCEEEHHHHHCCHHHHHHH IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTY HCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCEE KANLPPNVLPSTQVTRNAAVVAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALA ECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH KAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALCHGEGRVADVVVVHQR HHHHHCCCHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA