| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119736
Identifier: 197119736
GI number: 197119736
Start: 3876176
End: 3877477
Strand: Direct
Name: 197119736
Synonym: Gbem_3372
Alternate gene names: NA
Gene position: 3876176-3877477 (Clockwise)
Preceding gene: 197119735
Following gene: 197119737
Centisome position: 83.99
GC content: 59.52
Gene sequence:
>1302_bases TTGAAAATCCAAAAGAAAATAACGGGAGCCGTCCGTCCCTGTGTTTTGAAGCTAGCGGGAACCGCATTGATTACCTGTTC CCTGCTTGCCTTCGACCACCCGGCGGCTTACGCAACCTCGATTTCCGGAGATTCCCTGACCATCCTGCGCCTGAGGGAGA ACAAGCGGGATGACCAACTGTTCCCGCTATACGAGTACCTGAACCTCTCAGCGAGCGACACCGGCAGCCAAGGGACCATA TCGGTTCAGTTGGGCGGCTGGGGACGCATCGACCTGGGGGACAGAAGCAGCCAAAGAAGGAGCGACGGAGACATCCAGTA TGGCTTCCTGAGCTACCGGGCCAACAAGAACAACCTCCAGTTCAACGCCGGACGCCAGTGGGTAGTCGAGGGGGTCGCCA CCGAGAGGCTGGACGGCCTGTACCTGAGAACCGATCTCGTCGCCGGCTTTACCGCGGCGACCTTCGTCGGCACCCCCGTC ACTACCAACCCCAACTTCGAAGGGGGAGAGCTGATCTACGGCGGCAGGATCGCCCACACAATGCCCAAGTACTATTCCAT CGGCCTCTCGGCTCTAAGAAACGAGACCGACGCTGAAGGCCTGCGCGAAGAGGAAGGGGTGGACCTCTGGCTGCACCCGA TACCGCAGCTGGATATAAGCGGCCGCTCCAGCTACAACTCGCTCAGTAAAGGCTGGGCCGAACACGCCTACACCCTCAGT GTGACCCCGATGGACGCGTTGAGGCTGAGCGCATCGATGCAGCGCATCGACTATAAGGACTACTTCTACCATGTCACGAC CAGCGCCCTCAGCCTCACCAACGGTATCCTCGATCCCAACGAGGAACTCTGGAACGTCGGGGGGAGCATCGGTTTTCTCC CCACGAAGAACGTGAACGTCGCGCTGGAGTACAACCGCTACGAGTACGAGATCGCCGGCGACGCCGACTACTACGGCGTC ACCGCCAGCTTTACGACCCCTACCGCCCTGACCGCCGGTGCCTCCTTCCACCGCATGGACGGCGACACTGGACCTTTGCG CTACAACCAATACCGGGCCTGGGCTACTCAGAAATTCGGACCGGCCGACCTGACCCTCGATTTCTTCGATGTTGATTTCG ACAGCAGCATCACCGGGAGAACCAACACCTACTCCCTGGCCGCGGCCGCGGGATACAACTTCAACCGAAGCCTGAGAGTC ACAGCGGACATCGACTACCAGAGGAGCACCGACTTCGACAACGAGCTGCGCGGATTGGTGAAGCTGAGTTATGCATTTGG CTTCGGAAAGGAGGGGAAATAG
Upstream 100 bases:
>100_bases AAACACCTGCAGAACCGGGGGCCCATCTGCCCCCGGTTTTATTTGCAACTGCATTTCCCCACCAGCAAACAGAGACGGAA CCAAGAAAGGAGGAAATGTC
Downstream 100 bases:
>100_bases TGAAAAAGATATCGTTGATGGTCCTGATGGGAGTGACACTGTCGTTTCTTTACGCCTGTGCCAACACCAGCAGCATAGCC CGGGTGCACCCCGAGGAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MKIQKKITGAVRPCVLKLAGTALITCSLLAFDHPAAYATSISGDSLTILRLRENKRDDQLFPLYEYLNLSASDTGSQGTI SVQLGGWGRIDLGDRSSQRRSDGDIQYGFLSYRANKNNLQFNAGRQWVVEGVATERLDGLYLRTDLVAGFTAATFVGTPV TTNPNFEGGELIYGGRIAHTMPKYYSIGLSALRNETDAEGLREEEGVDLWLHPIPQLDISGRSSYNSLSKGWAEHAYTLS VTPMDALRLSASMQRIDYKDYFYHVTTSALSLTNGILDPNEELWNVGGSIGFLPTKNVNVALEYNRYEYEIAGDADYYGV TASFTTPTALTAGASFHRMDGDTGPLRYNQYRAWATQKFGPADLTLDFFDVDFDSSITGRTNTYSLAAAAGYNFNRSLRV TADIDYQRSTDFDNELRGLVKLSYAFGFGKEGK
Sequences:
>Translated_433_residues MKIQKKITGAVRPCVLKLAGTALITCSLLAFDHPAAYATSISGDSLTILRLRENKRDDQLFPLYEYLNLSASDTGSQGTI SVQLGGWGRIDLGDRSSQRRSDGDIQYGFLSYRANKNNLQFNAGRQWVVEGVATERLDGLYLRTDLVAGFTAATFVGTPV TTNPNFEGGELIYGGRIAHTMPKYYSIGLSALRNETDAEGLREEEGVDLWLHPIPQLDISGRSSYNSLSKGWAEHAYTLS VTPMDALRLSASMQRIDYKDYFYHVTTSALSLTNGILDPNEELWNVGGSIGFLPTKNVNVALEYNRYEYEIAGDADYYGV TASFTTPTALTAGASFHRMDGDTGPLRYNQYRAWATQKFGPADLTLDFFDVDFDSSITGRTNTYSLAAAAGYNFNRSLRV TADIDYQRSTDFDNELRGLVKLSYAFGFGKEGK >Mature_433_residues MKIQKKITGAVRPCVLKLAGTALITCSLLAFDHPAAYATSISGDSLTILRLRENKRDDQLFPLYEYLNLSASDTGSQGTI SVQLGGWGRIDLGDRSSQRRSDGDIQYGFLSYRANKNNLQFNAGRQWVVEGVATERLDGLYLRTDLVAGFTAATFVGTPV TTNPNFEGGELIYGGRIAHTMPKYYSIGLSALRNETDAEGLREEEGVDLWLHPIPQLDISGRSSYNSLSKGWAEHAYTLS VTPMDALRLSASMQRIDYKDYFYHVTTSALSLTNGILDPNEELWNVGGSIGFLPTKNVNVALEYNRYEYEIAGDADYYGV TASFTTPTALTAGASFHRMDGDTGPLRYNQYRAWATQKFGPADLTLDFFDVDFDSSITGRTNTYSLAAAAGYNFNRSLRV TADIDYQRSTDFDNELRGLVKLSYAFGFGKEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47842; Mature: 47842
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQKKITGAVRPCVLKLAGTALITCSLLAFDHPAAYATSISGDSLTILRLRENKRDDQL CCCHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCE FPLYEYLNLSASDTGSQGTISVQLGGWGRIDLGDRSSQRRSDGDIQYGFLSYRANKNNLQ EEHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEE FNAGRQWVVEGVATERLDGLYLRTDLVAGFTAATFVGTPVTTNPNFEGGELIYGGRIAHT ECCCCEEEEECHHHHHCCCEEEEHHHHHCHHHHHEECCCCCCCCCCCCCEEEECCCHHHH MPKYYSIGLSALRNETDAEGLREEEGVDLWLHPIPQLDISGRSSYNSLSKGWAEHAYTLS CCHHHHHHHHHHCCCCCHHCCHHHCCCEEEECCCCCEECCCCCCCHHHHHHHHHCEEEEE VTPMDALRLSASMQRIDYKDYFYHVTTSALSLTNGILDPNEELWNVGGSIGFLPTKNVNV ECCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCEEE ALEYNRYEYEIAGDADYYGVTASFTTPTALTAGASFHRMDGDTGPLRYNQYRAWATQKFG EEEECCEEEEECCCCCEEEEEEECCCCCEEECCCCEEECCCCCCCEEECEEEEEECCCCC PADLTLDFFDVDFDSSITGRTNTYSLAAAAGYNFNRSLRVTADIDYQRSTDFDNELRGLV CCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHE KLSYAFGFGKEGK EEEEHCCCCCCCC >Mature Secondary Structure MKIQKKITGAVRPCVLKLAGTALITCSLLAFDHPAAYATSISGDSLTILRLRENKRDDQL CCCHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCE FPLYEYLNLSASDTGSQGTISVQLGGWGRIDLGDRSSQRRSDGDIQYGFLSYRANKNNLQ EEHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEE FNAGRQWVVEGVATERLDGLYLRTDLVAGFTAATFVGTPVTTNPNFEGGELIYGGRIAHT ECCCCEEEEECHHHHHCCCEEEEHHHHHCHHHHHEECCCCCCCCCCCCCEEEECCCHHHH MPKYYSIGLSALRNETDAEGLREEEGVDLWLHPIPQLDISGRSSYNSLSKGWAEHAYTLS CCHHHHHHHHHHCCCCCHHCCHHHCCCEEEECCCCCEECCCCCCCHHHHHHHHHCEEEEE VTPMDALRLSASMQRIDYKDYFYHVTTSALSLTNGILDPNEELWNVGGSIGFLPTKNVNV ECCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCEEE ALEYNRYEYEIAGDADYYGVTASFTTPTALTAGASFHRMDGDTGPLRYNQYRAWATQKFG EEEECCEEEEECCCCCEEEEEEECCCCCEEECCCCEEECCCCCCCEEECEEEEEECCCCC PADLTLDFFDVDFDSSITGRTNTYSLAAAAGYNFNRSLRVTADIDYQRSTDFDNELRGLV CCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHE KLSYAFGFGKEGK EEEEHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA