| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is ygjT [C]
Identifier: 197119647
GI number: 197119647
Start: 3774341
End: 3775264
Strand: Direct
Name: ygjT [C]
Synonym: Gbem_3281
Alternate gene names: 197119647
Gene position: 3774341-3775264 (Clockwise)
Preceding gene: 197119646
Following gene: 197119654
Centisome position: 81.78
GC content: 58.55
Gene sequence:
>924_bases TTGTCTACCAGGGAAATGATGTGGGTTGCCTTCGCAGCCGTCATCACCGTCATGTTCGTGCTGGACCTGTTCGTCTTCAA CCGCAAGAGCCACGAGATCAAGTTTCGCGAGGCGCTCGCCTGGACCACCGTGTGGGTGGGGCTGGCCCTCGCCTTCAACG CCGGGATCGGATACTTCATGGGGCCGGCGAAGGCGCTGGAGTTCTTTACCGGCTATATCATCGAGGAGTCCCTGTCGGTC GACAACCTCTTCGTCTTCATCATGATCTTCTCCTACTTCAAGATCTCGAAGGCGCAGCAGCCCAAGATCCTCAAATGGGG GATCATCGGCGCGCTGGTGATGAGGGGGATCTTCATACTGGTGGGGATCGAGCTGATCGAGCGGTTCCACTGGATGATCT ACATCTTCGGGGGGATCCTGATCTACACCGGGATCAAGATGGCCTTCGGCGGGGACGACGAAGTCGAGCCGGAGAAAAAT CCGCTGGTTCGCCTGGTGAGGCGTTTCATGCCCATCACCAAAAGGATCTGGAGGGACAGGTTTTTCATCAAGAGGCACGG CGTGTGGGCGGCGACCCCGCTGTTTCTGACCCTGGTGGTGGTGGAGTCGAGCGACGTCATCTTCGCCGTCGACTCGATAC CCGCCGTACTCGCCGTGACCCACGACCCGTTCATCGTGTACAGCTCCAACATCTTCGCCATCATGGGGCTGCGCTCCCTG TACTACCTGCTGGCCCACGTGATGGAGATGTTCGTTTACCTGAAGCTGGGGGTCTCCTTCATCCTCGCCTTCGTCGGGGC CAAGATGCTTCTCGTGGACGTCGTCGAGATCCCGCTGCAGCTGTCCCTGGGCTTCATCATCGGGACGCTGGTAATATCCA TCCTCACTTCCGTGCTGCTCGCGAAGAAGCAGCACCGAGAATAA
Upstream 100 bases:
>100_bases CCTCACCGCGGGCGGTATCGCCAAGCTCTTTTCCACCCATCCGCCGATGGAGGAGAGGATCGCGAGACTCGAGCAGATGG GGCGTTAGAAGGAGGTTTAT
Downstream 100 bases:
>100_bases AAACAGGGGCTAGGGATCGGGGGCTAGGGGCTGGAAAAACCAATCCCCAGTCCCTGCTTTTCCCTAGCCCCTGTTTTTCG CGATTCTCACCTTGGTGATG
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSTREMMWVAFAAVITVMFVLDLFVFNRKSHEIKFREALAWTTVWVGLALAFNAGIGYFMGPAKALEFFTGYIIEESLSV DNLFVFIMIFSYFKISKAQQPKILKWGIIGALVMRGIFILVGIELIERFHWMIYIFGGILIYTGIKMAFGGDDEVEPEKN PLVRLVRRFMPITKRIWRDRFFIKRHGVWAATPLFLTLVVVESSDVIFAVDSIPAVLAVTHDPFIVYSSNIFAIMGLRSL YYLLAHVMEMFVYLKLGVSFILAFVGAKMLLVDVVEIPLQLSLGFIIGTLVISILTSVLLAKKQHRE
Sequences:
>Translated_307_residues MSTREMMWVAFAAVITVMFVLDLFVFNRKSHEIKFREALAWTTVWVGLALAFNAGIGYFMGPAKALEFFTGYIIEESLSV DNLFVFIMIFSYFKISKAQQPKILKWGIIGALVMRGIFILVGIELIERFHWMIYIFGGILIYTGIKMAFGGDDEVEPEKN PLVRLVRRFMPITKRIWRDRFFIKRHGVWAATPLFLTLVVVESSDVIFAVDSIPAVLAVTHDPFIVYSSNIFAIMGLRSL YYLLAHVMEMFVYLKLGVSFILAFVGAKMLLVDVVEIPLQLSLGFIIGTLVISILTSVLLAKKQHRE >Mature_306_residues STREMMWVAFAAVITVMFVLDLFVFNRKSHEIKFREALAWTTVWVGLALAFNAGIGYFMGPAKALEFFTGYIIEESLSVD NLFVFIMIFSYFKISKAQQPKILKWGIIGALVMRGIFILVGIELIERFHWMIYIFGGILIYTGIKMAFGGDDEVEPEKNP LVRLVRRFMPITKRIWRDRFFIKRHGVWAATPLFLTLVVVESSDVIFAVDSIPAVLAVTHDPFIVYSSNIFAIMGLRSLY YLLAHVMEMFVYLKLGVSFILAFVGAKMLLVDVVEIPLQLSLGFIIGTLVISILTSVLLAKKQHRE
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the terC family [H]
Homologues:
Organism=Escherichia coli, GI48994922, Length=311, Percent_Identity=45.016077170418, Blast_Score=276, Evalue=1e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005496 - InterPro: IPR022369 [H]
Pfam domain/function: PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 34973; Mature: 34841
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTREMMWVAFAAVITVMFVLDLFVFNRKSHEIKFREALAWTTVWVGLALAFNAGIGYFM CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHC GPAKALEFFTGYIIEESLSVDNLFVFIMIFSYFKISKAQQPKILKWGIIGALVMRGIFIL CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH VGIELIERFHWMIYIFGGILIYTGIKMAFGGDDEVEPEKNPLVRLVRRFMPITKRIWRDR HHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FFIKRHGVWAATPLFLTLVVVESSDVIFAVDSIPAVLAVTHDPFIVYSSNIFAIMGLRSL HHHHHCCCCHHHHHHHHHHEEECCCEEEEECCCCEEEEEECCCEEEEECCHHHHHHHHHH YYLLAHVMEMFVYLKLGVSFILAFVGAKMLLVDVVEIPLQLSLGFIIGTLVISILTSVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKQHRE HHHHCCC >Mature Secondary Structure STREMMWVAFAAVITVMFVLDLFVFNRKSHEIKFREALAWTTVWVGLALAFNAGIGYFM CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHC GPAKALEFFTGYIIEESLSVDNLFVFIMIFSYFKISKAQQPKILKWGIIGALVMRGIFIL CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH VGIELIERFHWMIYIFGGILIYTGIKMAFGGDDEVEPEKNPLVRLVRRFMPITKRIWRDR HHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FFIKRHGVWAATPLFLTLVVVESSDVIFAVDSIPAVLAVTHDPFIVYSSNIFAIMGLRSL HHHHHCCCCHHHHHHHHHHEEECCCEEEEECCCCEEEEEECCCEEEEECCHHHHHHHHHH YYLLAHVMEMFVYLKLGVSFILAFVGAKMLLVDVVEIPLQLSLGFIIGTLVISILTSVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKQHRE HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA