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The map label for this gene is gnfR [H]

Identifier: 197119645

GI number: 197119645

Start: 3772670

End: 3773245

Strand: Direct

Name: gnfR [H]

Synonym: Gbem_3279

Alternate gene names: 197119645

Gene position: 3772670-3773245 (Clockwise)

Preceding gene: 197119635

Following gene: 197119646

Centisome position: 81.75

GC content: 61.81

Gene sequence:

>576_bases
ATGGGAAAAGCGGTCCTGTACGTTCGCGACGAAGAGCTTCTGGAAAGCCTAAAAAACAGGCTCAGTGAGAGGGGATATGC
TGAAATAATAGCTTCAGGCAGCGCCGGCGAGCTTTTGGTGGACGCCTTAGAGCAGCGCCCCGAGGTGGCCGTAATCGAGT
ATGCCGACGGCGACCGGGAGATAGGAGCTACGGTGAAGCGGCTCTGGGACAAGCTCGGCATCCCGATCATCATGATCGCG
CAGAGCTGCGACCTTCAGGAGGTGCAGGAGTGGGGCGAGTCGCTGGTTTCCACCATCCTGGCGAAGCCGGTGCGGGAAGA
GGAGCTGGTGGCGGCGCTGGTCCTCTCGGTCGCGGCGGCGCGCCGGGTGGAGCGGCTCAAGGAAGAGGTCTCCACGCTGA
AAGAGAGCATCGAGAGCAGGAAGGTGATCGAGAAGGCCAAGGGGCGCCTGATGGAGCGGGACAAGCTCTCGGAGGCCGAG
GCTTTCCGGAGGATGCAAAGGCTCGCCATGGATCGCAGGATTTCCATGCGACAGTTGGCGGACGCGATCCTCTTGACCGA
CAGTATCGGGGGGTGA

Upstream 100 bases:

>100_bases
TTATAGCATCAGAATGTTTTTTTTGGAACGCTCTATGCTCTTATCCTGCTAGTTGTGCCGCAAAAGCGGCAGCGCCAATC
GTCGTAAGGGGGTGAAAGAC

Downstream 100 bases:

>100_bases
AGCTTTCTGGTTGACACATCGCCAGTCATTACCTATATTTCACAAAGTATAAAGGGGAGTAGCAATCGGTTACCACGGCA
ACCGACCTGTGTTCGTCAAG

Product: nitrogen fixation transcript antitermination response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MGKAVLYVRDEELLESLKNRLSERGYAEIIASGSAGELLVDALEQRPEVAVIEYADGDREIGATVKRLWDKLGIPIIMIA
QSCDLQEVQEWGESLVSTILAKPVREEELVAALVLSVAAARRVERLKEEVSTLKESIESRKVIEKAKGRLMERDKLSEAE
AFRRMQRLAMDRRISMRQLADAILLTDSIGG

Sequences:

>Translated_191_residues
MGKAVLYVRDEELLESLKNRLSERGYAEIIASGSAGELLVDALEQRPEVAVIEYADGDREIGATVKRLWDKLGIPIIMIA
QSCDLQEVQEWGESLVSTILAKPVREEELVAALVLSVAAARRVERLKEEVSTLKESIESRKVIEKAKGRLMERDKLSEAE
AFRRMQRLAMDRRISMRQLADAILLTDSIGG
>Mature_190_residues
GKAVLYVRDEELLESLKNRLSERGYAEIIASGSAGELLVDALEQRPEVAVIEYADGDREIGATVKRLWDKLGIPIIMIAQ
SCDLQEVQEWGESLVSTILAKPVREEELVAALVLSVAAARRVERLKEEVSTLKESIESRKVIEKAKGRLMERDKLSEAEA
FRRMQRLAMDRRISMRQLADAILLTDSIGG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21379; Mature: 21248

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKAVLYVRDEELLESLKNRLSERGYAEIIASGSAGELLVDALEQRPEVAVIEYADGDRE
CCCEEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCHH
IGATVKRLWDKLGIPIIMIAQSCDLQEVQEWGESLVSTILAKPVREEELVAALVLSVAAA
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RRVERLKEEVSTLKESIESRKVIEKAKGRLMERDKLSEAEAFRRMQRLAMDRRISMRQLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAILLTDSIGG
HHHHHHCCCCC
>Mature Secondary Structure 
GKAVLYVRDEELLESLKNRLSERGYAEIIASGSAGELLVDALEQRPEVAVIEYADGDRE
CCEEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCHH
IGATVKRLWDKLGIPIIMIAQSCDLQEVQEWGESLVSTILAKPVREEELVAALVLSVAAA
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RRVERLKEEVSTLKESIESRKVIEKAKGRLMERDKLSEAEAFRRMQRLAMDRRISMRQLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAILLTDSIGG
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]