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The map label for this gene is rfaC [H]

Identifier: 197117243

GI number: 197117243

Start: 1006363

End: 1007403

Strand: Direct

Name: rfaC [H]

Synonym: Gbem_0851

Alternate gene names: 197117243

Gene position: 1006363-1007403 (Clockwise)

Preceding gene: 197117242

Following gene: 308535197

Centisome position: 21.81

GC content: 63.98

Gene sequence:

>1041_bases
ATGCGTGTACTGATCATCAAGGCGTCGGCGCTTGGCGACATCATCAGCGCCCTGCCGGTTCTTGACTACCTGAGGCAGGC
CTCCCCCGGCATCGAGATCGACTGGGTGGTGGAAGAGCCGTTCCGGGAACTGCTGGAAGGAAACCCGCTCATAGCCCAGC
TGCACACGGTGCGGACCAAGGCGTGGCGCAAGCGCCCCTTTCTCCCCGCCCACTGGAGCGAGGTGGCCCGGTTGAAGGAG
GCGCTGCGGGAGCGCGAATACGCCTTCGTCTTCGACATCCAGGGGAACCTGAAGAGCGGCCTGATCTGCTGGCTCTCCGG
GGGGGCGGACCGGATCGGGTTCGATTCCGGCGAACTGCAGGAGTCGGTGAATTCCCTCTTTACCACCCGCCGAATACCGA
TGCGGCGTCAGGACTACCACGTCACCCAGAAATGCCTGCGCCTGGTCTCCGTCCCTTTCGGCAAAGATTTCAGCCAGATG
ACGCTCCGCTCGAGCATCGCCACCTCGGCCGAGGACGACGCCAACGCGGAAGCGCTCCTGGCGACCCTCTCCGACGGGCT
GGTGTTCCTGTTCCAGTACGGCACCACCTGGCAGACCAAGTTCTGGAGCAAAAAGAGCTGGGTCGCCCTCGGGCGGGAGG
TATTGGAGCAGTTCCCGGACGCCTCCATTCTATTCCCCTGGGGCAATGAAGGGGAGCGCGCCGCTGTGGCCGGGATCGCC
GCGGAAATAGGGGCCGGGAGCAGGGTTCTCGACCGCTACTCGCTTAAGGGGCTCACCGCTCTATTGAAGAAGGTCGACCT
GGTGGTCGGGGGCGATACCGGACCGGTGCACTTAGCGGCCGCAGTAGGGACCCCCACCGTCTCCTTTTACCGGGCGAGCG
ACGGCAAAAGAAGCGGCCCTCTCGGGGAGCGGCACGTGGTGCTGCAGTCGCCCATGCACTGCACCAAATGTTTCCGCACC
AAGTGCGACAAGGACGCACAGTGCAGCGATTCCATCAAGGTGGAGGCGGTGCTTGCCGGGATCAAGAAGCTGTTGGCCTG
A

Upstream 100 bases:

>100_bases
ATGAAGTACATGAAGCTTTACGAAATCCAGCGCAAAAGCCGCGGCGGGCTCGGCGGACAGGCGGGATAACCGAGTAACCT
GAAGAAAAAGAGAAGAGTTT

Downstream 100 bases:

>100_bases
CTGGGCGCAAAGAAGTGAGGTTCGCGCGAAGGTGATGGGAATGGAGCAGGGAGAGTGCATGGGGAGCGATAATCCGGTAG
TTTCGATTGTGACTGTGGTG

Product: lipopolysaccharide heptosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRVLIIKASALGDIISALPVLDYLRQASPGIEIDWVVEEPFRELLEGNPLIAQLHTVRTKAWRKRPFLPAHWSEVARLKE
ALREREYAFVFDIQGNLKSGLICWLSGGADRIGFDSGELQESVNSLFTTRRIPMRRQDYHVTQKCLRLVSVPFGKDFSQM
TLRSSIATSAEDDANAEALLATLSDGLVFLFQYGTTWQTKFWSKKSWVALGREVLEQFPDASILFPWGNEGERAAVAGIA
AEIGAGSRVLDRYSLKGLTALLKKVDLVVGGDTGPVHLAAAVGTPTVSFYRASDGKRSGPLGERHVVLQSPMHCTKCFRT
KCDKDAQCSDSIKVEAVLAGIKKLLA

Sequences:

>Translated_346_residues
MRVLIIKASALGDIISALPVLDYLRQASPGIEIDWVVEEPFRELLEGNPLIAQLHTVRTKAWRKRPFLPAHWSEVARLKE
ALREREYAFVFDIQGNLKSGLICWLSGGADRIGFDSGELQESVNSLFTTRRIPMRRQDYHVTQKCLRLVSVPFGKDFSQM
TLRSSIATSAEDDANAEALLATLSDGLVFLFQYGTTWQTKFWSKKSWVALGREVLEQFPDASILFPWGNEGERAAVAGIA
AEIGAGSRVLDRYSLKGLTALLKKVDLVVGGDTGPVHLAAAVGTPTVSFYRASDGKRSGPLGERHVVLQSPMHCTKCFRT
KCDKDAQCSDSIKVEAVLAGIKKLLA
>Mature_346_residues
MRVLIIKASALGDIISALPVLDYLRQASPGIEIDWVVEEPFRELLEGNPLIAQLHTVRTKAWRKRPFLPAHWSEVARLKE
ALREREYAFVFDIQGNLKSGLICWLSGGADRIGFDSGELQESVNSLFTTRRIPMRRQDYHVTQKCLRLVSVPFGKDFSQM
TLRSSIATSAEDDANAEALLATLSDGLVFLFQYGTTWQTKFWSKKSWVALGREVLEQFPDASILFPWGNEGERAAVAGIA
AEIGAGSRVLDRYSLKGLTALLKKVDLVVGGDTGPVHLAAAVGTPTVSFYRASDGKRSGPLGERHVVLQSPMHCTKCFRT
KCDKDAQCSDSIKVEAVLAGIKKLLA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=318, Percent_Identity=32.3899371069182, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38177; Mature: 38177

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLIIKASALGDIISALPVLDYLRQASPGIEIDWVVEEPFRELLEGNPLIAQLHTVRTK
CEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHH
AWRKRPFLPAHWSEVARLKEALREREYAFVFDIQGNLKSGLICWLSGGADRIGFDSGELQ
HHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHH
ESVNSLFTTRRIPMRRQDYHVTQKCLRLVSVPFGKDFSQMTLRSSIATSAEDDANAEALL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
ATLSDGLVFLFQYGTTWQTKFWSKKSWVALGREVLEQFPDASILFPWGNEGERAAVAGIA
HHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
AEIGAGSRVLDRYSLKGLTALLKKVDLVVGGDTGPVHLAAAVGTPTVSFYRASDGKRSGP
HHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCC
LGERHVVLQSPMHCTKCFRTKCDKDAQCSDSIKVEAVLAGIKKLLA
CCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRVLIIKASALGDIISALPVLDYLRQASPGIEIDWVVEEPFRELLEGNPLIAQLHTVRTK
CEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHH
AWRKRPFLPAHWSEVARLKEALREREYAFVFDIQGNLKSGLICWLSGGADRIGFDSGELQ
HHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHH
ESVNSLFTTRRIPMRRQDYHVTQKCLRLVSVPFGKDFSQMTLRSSIATSAEDDANAEALL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
ATLSDGLVFLFQYGTTWQTKFWSKKSWVALGREVLEQFPDASILFPWGNEGERAAVAGIA
HHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
AEIGAGSRVLDRYSLKGLTALLKKVDLVVGGDTGPVHLAAAVGTPTVSFYRASDGKRSGP
HHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCC
LGERHVVLQSPMHCTKCFRTKCDKDAQCSDSIKVEAVLAGIKKLLA
CCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]