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The map label for this gene is ydiF [H]

Identifier: 197117086

GI number: 197117086

Start: 817819

End: 819765

Strand: Reverse

Name: ydiF [H]

Synonym: Gbem_0690

Alternate gene names: 197117086

Gene position: 819765-817819 (Counterclockwise)

Preceding gene: 197117087

Following gene: 197117085

Centisome position: 17.76

GC content: 62.15

Gene sequence:

>1947_bases
ATGCTGCACCTGAAGAAGCTTTCCAAGGACTTCGCGGGGAAACCGCTTTTCACTAATATCAGCTGGCACCTGAAAAAGGG
CGAGCGCGTGGGTCTCGTCGGCGAGAATGGCGCCGGCAAATCCACCTTGATGCGCATCATCGCGGGCGAGGTGGAAAGCA
CCAGCGGCGAAATCCAGATCGCGCGCGGCGGGACGGTAGGCTACCTCCCCCAGGACGGCATCGTGGCGAAGGGACAGCCT
CTTTTCGCCGAGGTGATGACGGCGCTCTCGGAGCTGCAGGAAATAGAGAGCGAGATCGCGCAGCTCACGGCGCGGCTGGA
GCGGGAATCCCACGACGCCCCGGGACACGACCAGTTGCTGGACCGCTTCGGGCATCTCCAGGAGGAGTTCCGCCTCAAGG
GTGGCTATTCGATGGAGAGCGAGGTGGGAAACGTCCTCACCGGCCTCGGCTTCTCCCCCGCCGACTGGGAAAAGGAGTGC
GGCGAGTTCTCCGGCGGCTGGCAGATGCGCATTGCCCTGGCCAAACTGCTCCTGAAAAAACCGAACGTGCTCCTTCTTGA
CGAGCCGACCAACCACCTGGACATCGAGGCGCGCAACTGGCTCGAAGGGTACCTGCAGGGTTACCCGTATTCGGTAATGT
TGGTCTCGCACGACCGCTTCTTCCTGGACCAGGTCTGCTCGCGCATAGCCGAGGTATGGAACCACGACATCTCCGACTAC
CACTGCAACTACAGCCGCTATCTGGTGCTCAGGGAGGAGCGGGTATCCGCACTCAGGGACGCTAAAAAACGACAGGACGA
GGAGGTGGAGAAGATCGAGGACTTCATCTCCCGGTTCCGCTACAAGACCGACAAAGCGGCGCTGGTGCAGTCGCGCATCA
AGCAGCTGGAGAAGATCGAGCGCATCGTGCTGCCGCCGGAGAGGAAGAAGATCCGTTTCAGCTTCCCCACCCCTCCCAAA
AGCGGCAAGACCGTGATGGAGTTGACCAACGTCACCAAGGCGTACGGCAGCAACGTGGTCCTGGACGGCATCGACTTCAC
GGTGGAAAGCGGCGAGCGGATCGCCCTTGTAGGGCACAACGGCGCCGGCAAGTCGACCCTGATGCGGGTAATGGCGAACG
CCGACGTCACCTCCGGGAGCGTGAAAGACGGCCACAACGTGATCAAGGATTACTTCGCCCAGGACCAGGCGCAGGAGTTG
GATGCCTCCAGGAGCGCCTACGACGAACTCCTGGCGGACGCCCCCTTCGACATGGTGCCGCAGCTGCGCGACATCCTTGG
GGCCTTCCTCTTTTCCGGCGACGATATCCATAAGAAGGTCGCGGTCCTCTCGGGGGGCGAAAGAAACCGTCTGGCATTAG
CCAAGCTGCTCCTGCGCCCCTCCAACCTGCTCCTCATGGACGAGCCGACCAACCACCTCGACCTCTTCAGCAAGGAGGTC
CTCCTCGAGGCGCTCAAGAATTTCCCGGGCACCGTGGTCTTCGTCTCCCACGACCGCCACTTCATAGACGGCCTCGCCAC
CAGGGTGGTCGAGGTCGGCGGGGGCAAGCTGGAAAGCTTCTACGGCGACTATGAATATTATCTGGAGAAGACCTCCGGGA
TGGCGCCGTCATCAGCTACCGACGGCGGAGGACGCCTCACCCCTTCGCCCGCGGAGCAGAAAAAGACCGAATCTTCCGAC
AGCGACGCCGGGGGGGACCGGCTGTCACGGCAGCAGCAGCGCGAGCAGGACAAACAGCGCCAGAAAGAGGAGCGCGCCCG
CGAGCGCAAGCAGACAGAGCTAGAGCAGAAGATCGCCGTGAAGGAGGGGGAACTGGCCGAACTGGAGCAAGCAATGGCGG
CACCCGACTTCTTCTCGGACCATGAAGCCGCTCGTCTAGCGGGTGAACGGCACGCGCAACTGACCGAAGAGATCGCGTCG
CTGTACCAAGCATGGGAGTCAGCGTAA

Upstream 100 bases:

>100_bases
AAGTCCTCAGAAGTTCTCCTTGCCAATGGTTTGTTTCCCGGTTTAAGTTAATGTGCAGGGCTTGGCCCCACCTCTCATAT
CCCAAAAGGAACATCCAGAC

Downstream 100 bases:

>100_bases
ACGGCAGTTGCGGTTGACACTGCAAAGGGTTCCAGTACTCTATTAAAGTTTTAAACCCCCTAACAAAAACACCTGGAACC
CGCCATGACAGAGAACATCA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MLHLKKLSKDFAGKPLFTNISWHLKKGERVGLVGENGAGKSTLMRIIAGEVESTSGEIQIARGGTVGYLPQDGIVAKGQP
LFAEVMTALSELQEIESEIAQLTARLERESHDAPGHDQLLDRFGHLQEEFRLKGGYSMESEVGNVLTGLGFSPADWEKEC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLQGYPYSVMLVSHDRFFLDQVCSRIAEVWNHDISDY
HCNYSRYLVLREERVSALRDAKKRQDEEVEKIEDFISRFRYKTDKAALVQSRIKQLEKIERIVLPPERKKIRFSFPTPPK
SGKTVMELTNVTKAYGSNVVLDGIDFTVESGERIALVGHNGAGKSTLMRVMANADVTSGSVKDGHNVIKDYFAQDQAQEL
DASRSAYDELLADAPFDMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKLLLRPSNLLLMDEPTNHLDLFSKEV
LLEALKNFPGTVVFVSHDRHFIDGLATRVVEVGGGKLESFYGDYEYYLEKTSGMAPSSATDGGGRLTPSPAEQKKTESSD
SDAGGDRLSRQQQREQDKQRQKEERARERKQTELEQKIAVKEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIAS
LYQAWESA

Sequences:

>Translated_648_residues
MLHLKKLSKDFAGKPLFTNISWHLKKGERVGLVGENGAGKSTLMRIIAGEVESTSGEIQIARGGTVGYLPQDGIVAKGQP
LFAEVMTALSELQEIESEIAQLTARLERESHDAPGHDQLLDRFGHLQEEFRLKGGYSMESEVGNVLTGLGFSPADWEKEC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLQGYPYSVMLVSHDRFFLDQVCSRIAEVWNHDISDY
HCNYSRYLVLREERVSALRDAKKRQDEEVEKIEDFISRFRYKTDKAALVQSRIKQLEKIERIVLPPERKKIRFSFPTPPK
SGKTVMELTNVTKAYGSNVVLDGIDFTVESGERIALVGHNGAGKSTLMRVMANADVTSGSVKDGHNVIKDYFAQDQAQEL
DASRSAYDELLADAPFDMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKLLLRPSNLLLMDEPTNHLDLFSKEV
LLEALKNFPGTVVFVSHDRHFIDGLATRVVEVGGGKLESFYGDYEYYLEKTSGMAPSSATDGGGRLTPSPAEQKKTESSD
SDAGGDRLSRQQQREQDKQRQKEERARERKQTELEQKIAVKEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIAS
LYQAWESA
>Mature_648_residues
MLHLKKLSKDFAGKPLFTNISWHLKKGERVGLVGENGAGKSTLMRIIAGEVESTSGEIQIARGGTVGYLPQDGIVAKGQP
LFAEVMTALSELQEIESEIAQLTARLERESHDAPGHDQLLDRFGHLQEEFRLKGGYSMESEVGNVLTGLGFSPADWEKEC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLQGYPYSVMLVSHDRFFLDQVCSRIAEVWNHDISDY
HCNYSRYLVLREERVSALRDAKKRQDEEVEKIEDFISRFRYKTDKAALVQSRIKQLEKIERIVLPPERKKIRFSFPTPPK
SGKTVMELTNVTKAYGSNVVLDGIDFTVESGERIALVGHNGAGKSTLMRVMANADVTSGSVKDGHNVIKDYFAQDQAQEL
DASRSAYDELLADAPFDMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKLLLRPSNLLLMDEPTNHLDLFSKEV
LLEALKNFPGTVVFVSHDRHFIDGLATRVVEVGGGKLESFYGDYEYYLEKTSGMAPSSATDGGGRLTPSPAEQKKTESSD
SDAGGDRLSRQQQREQDKQRQKEERARERKQTELEQKIAVKEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIAS
LYQAWESA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=30.3370786516854, Blast_Score=262, Evalue=7e-70,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=30.7977736549165, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=30.7977736549165, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=30.6985294117647, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=30.6985294117647, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI150417984, Length=241, Percent_Identity=29.8755186721992, Blast_Score=73, Evalue=9e-13,
Organism=Escherichia coli, GI1789751, Length=618, Percent_Identity=33.6569579288026, Blast_Score=330, Evalue=3e-91,
Organism=Escherichia coli, GI1787041, Length=531, Percent_Identity=34.2749529190207, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI2367384, Length=536, Percent_Identity=33.5820895522388, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1787182, Length=525, Percent_Identity=34.6666666666667, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=28.310502283105, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI87081709, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787712, Length=227, Percent_Identity=26.8722466960352, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=197, Percent_Identity=31.9796954314721, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=234, Percent_Identity=28.6324786324786, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=231, Percent_Identity=26.8398268398268, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=29.7435897435897, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=26.6393442622951, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=32.4528301886792, Blast_Score=266, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI17555318, Length=521, Percent_Identity=32.4376199616123, Blast_Score=238, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI17559834, Length=537, Percent_Identity=30.3538175046555, Blast_Score=233, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI71992290, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=32.9067641681901, Blast_Score=266, Evalue=8e-72,
Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=32.703213610586, Blast_Score=230, Evalue=6e-61,
Organism=Saccharomyces cerevisiae, GI6325030, Length=401, Percent_Identity=27.930174563591, Blast_Score=120, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=391, Percent_Identity=27.8772378516624, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=402, Percent_Identity=25.8706467661692, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24666836, Length=521, Percent_Identity=32.6295585412668, Blast_Score=271, Evalue=1e-72,
Organism=Drosophila melanogaster, GI24641342, Length=535, Percent_Identity=31.0280373831776, Blast_Score=240, Evalue=2e-63,
Organism=Drosophila melanogaster, GI24642252, Length=519, Percent_Identity=30.8285163776493, Blast_Score=226, Evalue=5e-59,
Organism=Drosophila melanogaster, GI18859989, Length=519, Percent_Identity=30.8285163776493, Blast_Score=226, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72462; Mature: 72462

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLKKLSKDFAGKPLFTNISWHLKKGERVGLVGENGAGKSTLMRIIAGEVESTSGEIQI
CCCHHHHHHHHCCCCEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE
ARGGTVGYLPQDGIVAKGQPLFAEVMTALSELQEIESEIAQLTARLERESHDAPGHDQLL
EECCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DRFGHLQEEFRLKGGYSMESEVGNVLTGLGFSPADWEKECGEFSGGWQMRIALAKLLLKK
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCC
PNVLLLDEPTNHLDIEARNWLEGYLQGYPYSVMLVSHDRFFLDQVCSRIAEVWNHDISDY
CCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCE
HCNYSRYLVLREERVSALRDAKKRQDEEVEKIEDFISRFRYKTDKAALVQSRIKQLEKIE
ECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RIVLPPERKKIRFSFPTPPKSGKTVMELTNVTKAYGSNVVLDGIDFTVESGERIALVGHN
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEECCCCEEEEEECC
GAGKSTLMRVMANADVTSGSVKDGHNVIKDYFAQDQAQELDASRSAYDELLADAPFDMVP
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKLLLRPSNLLLMDEPTNHLDLFSKEV
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LLEALKNFPGTVVFVSHDRHFIDGLATRVVEVGGGKLESFYGDYEYYLEKTSGMAPSSAT
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCCCCC
DGGGRLTPSPAEQKKTESSDSDAGGDRLSRQQQREQDKQRQKEERARERKQTELEQKIAV
CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIASLYQAWESA
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLHLKKLSKDFAGKPLFTNISWHLKKGERVGLVGENGAGKSTLMRIIAGEVESTSGEIQI
CCCHHHHHHHHCCCCEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE
ARGGTVGYLPQDGIVAKGQPLFAEVMTALSELQEIESEIAQLTARLERESHDAPGHDQLL
EECCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DRFGHLQEEFRLKGGYSMESEVGNVLTGLGFSPADWEKECGEFSGGWQMRIALAKLLLKK
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCC
PNVLLLDEPTNHLDIEARNWLEGYLQGYPYSVMLVSHDRFFLDQVCSRIAEVWNHDISDY
CCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCE
HCNYSRYLVLREERVSALRDAKKRQDEEVEKIEDFISRFRYKTDKAALVQSRIKQLEKIE
ECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RIVLPPERKKIRFSFPTPPKSGKTVMELTNVTKAYGSNVVLDGIDFTVESGERIALVGHN
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEECCCCEEEEEECC
GAGKSTLMRVMANADVTSGSVKDGHNVIKDYFAQDQAQELDASRSAYDELLADAPFDMVP
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKLLLRPSNLLLMDEPTNHLDLFSKEV
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LLEALKNFPGTVVFVSHDRHFIDGLATRVVEVGGGKLESFYGDYEYYLEKTSGMAPSSAT
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCCCCC
DGGGRLTPSPAEQKKTESSDSDAGGDRLSRQQQREQDKQRQKEERARERKQTELEQKIAV
CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIASLYQAWESA
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]