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The map label for this gene is yajD [H]

Identifier: 197117087

GI number: 197117087

Start: 820009

End: 820347

Strand: Reverse

Name: yajD [H]

Synonym: Gbem_0691

Alternate gene names: 197117087

Gene position: 820347-820009 (Counterclockwise)

Preceding gene: 197117088

Following gene: 197117086

Centisome position: 17.78

GC content: 61.06

Gene sequence:

>339_bases
ATGAGTCCATCGTTTCGTCCGCGCGGACCTAAGAGCGTCCCGCCCAAGAGCGCCGAGGAGATAGACGAGTTGGTCCGCAA
GATGCGCGGCGAACAGCAGCGCCCCGACAACTACCGGGAGCGCTCGCTCAAGCTGCACGGCTGGATCTGCGCCAAGTGCG
GGAGGGAGTTCGAGCTTGCCAACCTGCACCTTTTGACCGTGCACCACAAAGACGGCAACCATAACTACAACCCGCCGGAC
GGGAGCAACTGGGAGAACCTCTGCGTCTACTGTCACGACGACGAGCACAGCCGCACCATCCTCGCAGAGTATCTTGAGGG
GAAGGAGAAGAAACCCTGA

Upstream 100 bases:

>100_bases
ACTTCCCGAGTTGATCGCCGACACCATCGACGGGATGCGTGCCGAGGCCGAAGCCATCGGACTTAAAGGGAACCTGTAGC
GCCCCGAAAAGGAGACAGAG

Downstream 100 bases:

>100_bases
AACCTCTCACAGGGAGAACTTCTGAGAAAATCTGAGCACGGCGGGAGAGAGGCCGAGATGCTTTACCCCGTTCAGCCTTT
GGTTTTCTCAGATTTTCTCC

Product: HNH endonuclease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MSPSFRPRGPKSVPPKSAEEIDELVRKMRGEQQRPDNYRERSLKLHGWICAKCGREFELANLHLLTVHHKDGNHNYNPPD
GSNWENLCVYCHDDEHSRTILAEYLEGKEKKP

Sequences:

>Translated_112_residues
MSPSFRPRGPKSVPPKSAEEIDELVRKMRGEQQRPDNYRERSLKLHGWICAKCGREFELANLHLLTVHHKDGNHNYNPPD
GSNWENLCVYCHDDEHSRTILAEYLEGKEKKP
>Mature_111_residues
SPSFRPRGPKSVPPKSAEEIDELVRKMRGEQQRPDNYRERSLKLHGWICAKCGREFELANLHLLTVHHKDGNHNYNPPDG
SNWENLCVYCHDDEHSRTILAEYLEGKEKKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=66, Percent_Identity=57.5757575757576, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 13064; Mature: 12933

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSFRPRGPKSVPPKSAEEIDELVRKMRGEQQRPDNYRERSLKLHGWICAKCGREFELA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCEECCCEEEECCCCCEEEC
NLHLLTVHHKDGNHNYNPPDGSNWENLCVYCHDDEHSRTILAEYLEGKEKKP
EEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SPSFRPRGPKSVPPKSAEEIDELVRKMRGEQQRPDNYRERSLKLHGWICAKCGREFELA
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCEECCCEEEECCCCCEEEC
NLHLLTVHHKDGNHNYNPPDGSNWENLCVYCHDDEHSRTILAEYLEGKEKKP
EEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]